• Re: Hs chromo-2 fusion 0.9 Ma?

    From Primum Sapienti@21:1/5 to Marc Verhaegen on Sun Jan 7 22:43:17 2024
    Marc Verhaegen wrote:


    Link and the *real* abstract


    Abstract
    Background
    The reduction of the chromosome number from
    48 in the Great Apes to 46 in modern humans
    is thought to result from the end-to-end fusion
    of two ancestral non-human primate chromosomes
    forming the human chromosome 2 (HSA2). Genomic
    signatures of this event are the presence of
    inverted telomeric repeats at the HSA2 fusion
    site and a block of degenerate satellite
    sequences that mark the remnants of the
    ancestral centromere. It has been estimated that
    this fusion arose up to 4.5 million years ago
    (Mya).

    Results
    We have developed an enhanced algorithm for the
    detection and efficient counting of the locally
    over-represented weak-to-strong (AT to GC)
    substitutions. By analyzing the enrichment of
    these substitutions around the fusion site of
    HSA2 we estimated its formation time at 0.9 Mya
    with a 95% confidence interval of 0.4-1.5 Mya.
    Additionally, based on the statistics derived
    from our algorithm, we have reconstructed the
    evolutionary distances among the Great Apes
    (Hominoidea).

    Conclusions
    Our results shed light on the HSA2 fusion
    formation and provide a novel computational
    alternative for the estimation of the speciation
    chronology.



    See figure 4 which compares results from the
    literature and from their method

    <https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-022-08828-7/figures/4>

    "Please note, that each period calculated with the
    timeframe overlaps the with time frames taken from
    the literature"

    The overlap is considerable except for gibbons.

    Further:
    "Overall, our results are consistent with the
    literature reports..."

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