• UDD dump seems to be outdated (Was: Why is the list of outdated package

    From Andreas Tille@21:1/5 to All on Mon Oct 11 08:40:02 2021
    Hi,

    I think the issue described below by Nilesh Patra might be caused by the
    fact that the UDD dump[3] is not updated properly. I just downloaded
    the dump and get a modification time of

    Modify: 2021-10-11 02:55:01.000000000 +0200

    and md5sum

    fb9c6cb3ddb3d819983f7c0d82a50669 udd.dump

    While the UDD on ullmann has

    udd=> select source , version, debian_mangled_uversion, upstream_version, status from upstream where source in ('r-cran-s2','r-cran-rwave') ;
    source | version | debian_mangled_uversion | upstream_version | status --------------+---------+-------------------------+------------------+------------
    r-cran-rwave | 2.6-0-1 | 2.6-0 | 2.6-0 | up to date
    r-cran-s2 | 1.0.7-3 | 1.0.7 | 1.0.7 | up to date
    (2 rows)

    my local import has

    udd=# select source , version, debian_mangled_uversion, upstream_version, status from upstream where source in ('r-cran-s2','r-cran-rwave') ;
    source | version | debian_mangled_uversion | upstream_version | status --------------+---------+-------------------------+------------------+------------
    r-cran-rwave | 2.5-0-1 | 2.5-0 | 2.5-0 | up to date
    r-cran-s2 | 1.0.6-1 | 1.0.6 | 1.0.6 | up to date
    (2 rows)


    Could someone please check the export procedure of the dump?
    This probably also affects the public udd mirror (even if I need
    to admit that I can not reach this currently).

    Kind regards

    Andreas.

    Am Thu, Oct 07, 2021 at 06:02:59PM +0530 schrieb Nilesh Patra:
    I had uploaded r-cran-rwave couple of days back, and it has even
    migrated to testing. r-cran-s2 is also updated for a while, but
    it shows the older version here[1]

    Same goes for med-team packages, for example augur, bbmap insilicoseq
    so on.

    Something wrong with UDD again?


    [1]: https://salsa.debian.org/r-pkg-team/maintenance-utilities/-/blob/master/outdated_r-packages.txt
    [2]: https://salsa.debian.org/med-team/community/helper-scripts/-/blob/master/outdated_med-packages.txt

    Nilesh

    [3] https://udd.debian.org/dumps/udd.dump

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  • From Lucas Nussbaum@21:1/5 to Andreas Tille on Tue Oct 12 15:10:02 2021
    Hi,

    On 11/10/21 at 08:39 +0200, Andreas Tille wrote:
    Hi,

    I think the issue described below by Nilesh Patra might be caused by the
    fact that the UDD dump[3] is not updated properly. I just downloaded
    the dump and get a modification time of

    Modify: 2021-10-11 02:55:01.000000000 +0200

    and md5sum

    fb9c6cb3ddb3d819983f7c0d82a50669 udd.dump

    While the UDD on ullmann has

    udd=> select source , version, debian_mangled_uversion, upstream_version, status from upstream where source in ('r-cran-s2','r-cran-rwave') ;
    source | version | debian_mangled_uversion | upstream_version | status
    --------------+---------+-------------------------+------------------+------------
    r-cran-rwave | 2.6-0-1 | 2.6-0 | 2.6-0 | up to date
    r-cran-s2 | 1.0.7-3 | 1.0.7 | 1.0.7 | up to date
    (2 rows)

    my local import has

    udd=# select source , version, debian_mangled_uversion, upstream_version, status from upstream where source in ('r-cran-s2','r-cran-rwave') ;
    source | version | debian_mangled_uversion | upstream_version | status
    --------------+---------+-------------------------+------------------+------------
    r-cran-rwave | 2.5-0-1 | 2.5-0 | 2.5-0 | up to date
    r-cran-s2 | 1.0.6-1 | 1.0.6 | 1.0.6 | up to date
    (2 rows)


    Could someone please check the export procedure of the dump?
    This probably also affects the public udd mirror (even if I need
    to admit that I can not reach this currently).

    lucas@ullmann:~$ ls -l /srv/udd.debian.org/udd/web/dumps/udd.dump
    -rw-r--r-- 1 udd uddadm 1923508046 Oct 12 06:54 /srv/udd.debian.org/udd/web/dumps/udd.dump

    that looks fine?

    Lucas

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  • From Andreas Tille@21:1/5 to All on Tue Oct 12 16:50:03 2021
    Hi,

    Am Tue, Oct 12, 2021 at 02:43:56PM +0200 schrieb Lucas Nussbaum:
    udd=> select source , version, debian_mangled_uversion, upstream_version, status from upstream where source in ('r-cran-s2','r-cran-rwave') ;
    source | version | debian_mangled_uversion | upstream_version | status
    --------------+---------+-------------------------+------------------+------------
    r-cran-rwave | 2.6-0-1 | 2.6-0 | 2.6-0 | up to date
    r-cran-s2 | 1.0.7-3 | 1.0.7 | 1.0.7 | up to date
    (2 rows)

    my local import has

    udd=# select source , version, debian_mangled_uversion, upstream_version, status from upstream where source in ('r-cran-s2','r-cran-rwave') ;
    source | version | debian_mangled_uversion | upstream_version | status
    --------------+---------+-------------------------+------------------+------------
    r-cran-rwave | 2.5-0-1 | 2.5-0 | 2.5-0 | up to date
    r-cran-s2 | 1.0.6-1 | 1.0.6 | 1.0.6 | up to date
    (2 rows)


    Could someone please check the export procedure of the dump?
    This probably also affects the public udd mirror (even if I need
    to admit that I can not reach this currently).

    lucas@ullmann:~$ ls -l /srv/udd.debian.org/udd/web/dumps/udd.dump
    -rw-r--r-- 1 udd uddadm 1923508046 Oct 12 06:54 /srv/udd.debian.org/udd/web/dumps/udd.dump

    that looks fine?

    Please note: I did not questioned that the dump had the correct timestamp but incorrect *content*. However, after downloading this dump I correctly get:

    udd=# select source , version, debian_mangled_uversion, upstream_version, status from upstream where source in ('r-cran-s2','r-cran-rwave') ;
    source | version | debian_mangled_uversion | upstream_version | status --------------+---------+-------------------------+------------------+------------
    r-cran-rwave | 2.6-0-1 | 2.6-0 | 2.6-0 | up to date
    r-cran-s2 | 1.0.7-3 | 1.0.7 | 1.0.7 | up to date
    (2 rows)


    Fine. However, the public UDD mirror has not synced yet:


    $ psql --port=5432 --host=udd-mirror.debian.net --username=udd-mirror udd
    ...
    udd=> select source , version, debian_mangled_uversion, upstream_version, status from upstream where source in ('r-cran-s2','r-cran-rwave') ;
    source | version | debian_mangled_uversion | upstream_version | status
    --------------+---------+-------------------------+------------------+-------------------------
    r-cran-rwave | 2.5-0-1 | 2.5-0 | 2.6-0 | newer package available
    r-cran-s2 | 1.0.6-1 | 1.0.6 | 1.0.7 | newer package available


    I just hope this will settle with the next update of the public mirror.

    Kind regards

    Andreas.

    --
    http://fam-tille.de

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  • From Andreas Tille@21:1/5 to All on Wed Oct 13 07:10:01 2021
    Hi again,

    I just checked and the public UDD mirror keeps on presenting outdated
    results as I wrote below. Can some of the admins have a look?

    Thanks a lot

    Andreas.

    Am Tue, Oct 12, 2021 at 04:42:21PM +0200 schrieb Andreas Tille:
    Hi,

    Am Tue, Oct 12, 2021 at 02:43:56PM +0200 schrieb Lucas Nussbaum:
    udd=> select source , version, debian_mangled_uversion, upstream_version, status from upstream where source in ('r-cran-s2','r-cran-rwave') ;
    source | version | debian_mangled_uversion | upstream_version | status
    --------------+---------+-------------------------+------------------+------------
    r-cran-rwave | 2.6-0-1 | 2.6-0 | 2.6-0 | up to date
    r-cran-s2 | 1.0.7-3 | 1.0.7 | 1.0.7 | up to date
    (2 rows)

    my local import has

    udd=# select source , version, debian_mangled_uversion, upstream_version, status from upstream where source in ('r-cran-s2','r-cran-rwave') ;
    source | version | debian_mangled_uversion | upstream_version | status
    --------------+---------+-------------------------+------------------+------------
    r-cran-rwave | 2.5-0-1 | 2.5-0 | 2.5-0 | up to date
    r-cran-s2 | 1.0.6-1 | 1.0.6 | 1.0.6 | up to date
    (2 rows)


    Could someone please check the export procedure of the dump?
    This probably also affects the public udd mirror (even if I need
    to admit that I can not reach this currently).

    lucas@ullmann:~$ ls -l /srv/udd.debian.org/udd/web/dumps/udd.dump -rw-r--r-- 1 udd uddadm 1923508046 Oct 12 06:54 /srv/udd.debian.org/udd/web/dumps/udd.dump

    that looks fine?

    Please note: I did not questioned that the dump had the correct timestamp but incorrect *content*. However, after downloading this dump I correctly get:

    udd=# select source , version, debian_mangled_uversion, upstream_version, status from upstream where source in ('r-cran-s2','r-cran-rwave') ;
    source | version | debian_mangled_uversion | upstream_version | status
    --------------+---------+-------------------------+------------------+------------
    r-cran-rwave | 2.6-0-1 | 2.6-0 | 2.6-0 | up to date
    r-cran-s2 | 1.0.7-3 | 1.0.7 | 1.0.7 | up to date
    (2 rows)


    Fine. However, the public UDD mirror has not synced yet:


    $ psql --port=5432 --host=udd-mirror.debian.net --username=udd-mirror udd
    ...
    udd=> select source , version, debian_mangled_uversion, upstream_version, status from upstream where source in ('r-cran-s2','r-cran-rwave') ;
    source | version | debian_mangled_uversion | upstream_version | status
    --------------+---------+-------------------------+------------------+-------------------------
    r-cran-rwave | 2.5-0-1 | 2.5-0 | 2.6-0 | newer package available
    r-cran-s2 | 1.0.6-1 | 1.0.6 | 1.0.7 | newer package available


    I just hope this will settle with the next update of the public mirror.

    Kind regards

    Andreas.

    --
    http://fam-tille.de



    --
    http://fam-tille.de

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  • From Mattia Rizzolo@21:1/5 to Andreas Tille on Wed Oct 13 14:50:02 2021
    Hi,

    On Wed, Oct 13, 2021 at 06:44:46AM +0200, Andreas Tille wrote:
    I just checked and the public UDD mirror keeps on presenting outdated
    results as I wrote below. Can some of the admins have a look?

    Indeed udd-mirror had stopped taking in updates due to a leaked
    lockfile.

    It should be up2date now.

    --
    regards,
    Mattia Rizzolo

    GPG Key: 66AE 2B4A FCCF 3F52 DA18 4D18 4B04 3FCD B944 4540 .''`.
    More about me: https://mapreri.org : :' : Launchpad user: https://launchpad.net/~mapreri `. `'`
    Debian QA page: https://qa.debian.org/developer.php?login=mattia `-

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  • From Andreas Tille@21:1/5 to All on Wed Oct 13 15:30:02 2021
    Am Wed, Oct 13, 2021 at 02:42:01PM +0200 schrieb Mattia Rizzolo:
    Indeed udd-mirror had stopped taking in updates due to a leaked
    lockfile.

    It should be up2date now.

    Thanks a lot

    Andreas.

    --
    http://fam-tille.de

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