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  • Bug#887340: gromacs: FTBFS on x32: tests 2 and 13 time out

    From Aaron M. Ucko@21:1/5 to All on Mon Jan 15 04:20:01 2018
    Source: gromacs
    Version: 2018-1
    Severity: important
    Tags: upstream
    Justification: fails to build from source (but built successfully in the past) User: debian-x32@lists.debian.org
    Usertags: x32

    Builds of gromacs 2018 for x32 (admittedly not a release architecture)
    have been failing with mysterious timeouts in tests 2 and 13, per
    the below excerpts from [1].

    Could you please take a look?

    Thanks!

    [1] https://buildd.debian.org/status/fetch.php?pkg=gromacs&arch=x32&ver=2018-1&stamp=1515722173&raw=0

    ----------------------------------------------------------------------

    2/24 Test #2: TestUtilsMpiUnitTests ............***Timeout 30.01 sec [==========] Running 1 test from 1 test case.
    [----------] Global test environment set-up.
    [----------] 1 test from MpiSelfTest
    [ RUN ] MpiSelfTest.Runs
    [ OK ] MpiSelfTest.Runs (0 ms)
    [----------] 1 test from MpiSelfTest (0 ms total)

    [----------] Global test environment tear-down
    [==========] 1 test from 1 test case ran. (0 ms total)
    [ PASSED ] 1 test.

    [...]

    13/24 Test #13: MdrunUtilityMpiUnitTests .........***Timeout 30.01 sec [==========] Running 13 tests from 2 test cases.
    [----------] Global test environment set-up.
    [----------] 6 tests from ThreadAffinityMultiRankTest
    [...]
    [----------] 6 tests from ThreadAffinityMultiRankTest (459 ms total)

    [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest
    [...]
    [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (776 ms total)

    [----------] Global test environment tear-down
    [==========] 13 tests from 2 test cases ran. (1236 ms total)
    [ PASSED ] 13 tests.
    [...]
    92% tests passed, 2 tests failed out of 24

    Label Time Summary:
    GTest = 62.39 sec (24 tests)
    MpiTest = 60.02 sec (2 tests)
    UnitTest = 62.39 sec (24 tests)

    Total Test time (real) = 62.48 sec

    The following tests FAILED:
    2 - TestUtilsMpiUnitTests (Timeout)
    13 - MdrunUtilityMpiUnitTests (Timeout)
    Errors while running CTest

    --
    Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?amu@monk.mit.edu

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