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Dear maintainer,

Please find attached a final version of this patch for the time_t
transition. This patch is being uploaded to unstable.

Note that this adds a versioned build-dependency on dpkg-dev, to guard
against accidental backports with a wrong ABI.

Thanks!


-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.5.0-14-generic (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)

diff -Nru genometools-1.6.5+ds/debian/changelog genometools-1.6.5+ds/debian/changelog
--- genometools-1.6.5+ds/debian/changelog 2023-10-25 22:08:09.000000000 +0000
+++ genometools-1.6.5+ds/debian/changelog 2024-02-28 16:25:48.000000000 +0000
@@ -1,3 +1,10 @@
+genometools (1.6.5+ds-2.1) unstable; urgency=medium
+
+ * Non-maintainer upload.
+ * Rename libraries for 64-bit time_t transition. Closes: #1062071
+
+ -- Steve Langasek <vorlon@debian.org> Wed, 28 Feb 2024 16:25:48 +0000
+
genometools (1.6.5+ds-2) unstable; urgency=medium

* Facilitate building twice from the same source directory.
diff -Nru genometools-1.6.5+ds/debian/control genometools-1.6.5+ds/debian/control
--- genometools-1.6.5+ds/debian/control 2023-09-19 21:22:02.000000000 +0000
+++ genometools-1.6.5+ds/debian/control 2024-02-28 16:25:48.000000000 +0000
@@ -4,7 +4,7 @@
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 13),
+Build-Depends: dpkg-dev (>= 1.22.5), debhelper (>= 13),
debhelper-compat (= 13),
d

--v3OuroJu4wpTWVbE
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Dear maintainers,

There was a hard-coded test dependency on libgenometools0 in debian/tests/control which prevents this package from being able to migrate
to testing.

There is no need to hard-code a dependency on the runtime lib given that
there is already a test dependency on libgenometools-dev.

I am uploading a follow-up 0-day NMU to fix this outstanding issue from the time_t transition. Please find attached a comprehensive NMU debdiff.

On Wed, Feb 28, 2024 at 04:30:06PM +0000, Steve Langasek wrote:

Dear maintainer,

Please find attached a final version of this patch for the time_t
transition. This patch is being uploaded to unstable.

Note that this adds a versioned build-dependency on dpkg-dev, to guard against accidental backports with a wrong ABI.

Thanks!

-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.5.0-14-generic (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)

diff -Nru genometools-1.6.5+ds/debian/changelog genometools-1.6.5+ds/debian/changelog
--- genometools-1.6.5+ds/debian/changelog 2023-10-25 22:08:09.000000000 +0000
+++ genometools-1.6.5+ds/debian/changelog 2024-02-28 16:25:48.000000000 +0000
@@ -1,3 +1,10 @@
+genometools (1.6.5+ds-2.1) unstable; urgency=medium
+
+ * Non-maintainer upload.
+ * Rename libraries for 64-bit time_t transition. Closes: #1062071
+
+ -- Steve Langasek <vorlon@debian.org> Wed, 28 Feb 2024 16:25:48 +0000
+
genometools (1.6.5+ds-2) unstable; urgency=medium

* Facilitate building twice from the same source directory.
diff -Nru genometools-1.6.5+ds/debian/control genometools-1.6.5+ds/debian/control
--- genometools-1.6.5+ds/debian/control 2023-09-19 21:22:02.000000000 +0000
+++ genometools-1.6.5+ds/debian/control 2024-02-28 16:25:48.000000000 +0000
@@ -4,7 +4,7 @@
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 13),
+Build-Depends: dpkg-dev (>= 1.22.5), debhelper (>= 13),
debhelper-compat (= 13),
dh-python,
liblua5.1-0-dev,
@@ -70,7 +70,10 @@
transformations, style files, etc. required to use the GenomeTools
executable and/or library.

-Package: libgenometools0
+Package: libgenometools0t64
+Provides: ${t64:Provides}
+Replaces: libgenometools0
+Breaks: libgenometools0 (<< ${source:Version})
Architecture: any
Section: libs
Depends: ${shlibs:Depends},
@@ -91,7 +94,7 @@
Section: libdevel
Depends: ${shlibs:Depends},
${misc:Depends},
- libgenometools0 (= ${binary:Version})
+ libgenometools0t64 (= ${binary:Version})
Description: development files for GenomeTools
This package contains the GenomeTools static library and necessary
header files.
@@ -118,7 +121,7 @@
Depends: ${shlibs:Depends},
${misc:Depends},
${python3:Depends},
- libgenometools0
+ libgenometools0t64
Description: Python3 bindings for genometools
Partial Python3 bindings for the GenomeTools library. Besides basic
bioinformatics data structures, the library contains components for sequence
diff -Nru genometools-1.6.5+ds/debian/libgenometools0.install genometools-1.6.5+ds/debian/libgenometools0.install
--- genometools-1.6.5+ds/debian/libgenometools0.install 2023-09-19 21:22:02.000000000 +0000
+++ genometools-1.6.5+ds/debian/libgenometools0.install 1970-01-01 00:00:00.000000000 +0000
@@ -1 +0,0 @@
-lib/libgenometools.so.0 usr/lib
diff -Nru genometools-1.6.5+ds/debian/libgenometools0t64.install genometools-1.6.5+ds/debian/libgenometools0t64.install
--- genometools-1.6.5+ds/debian/libgenometools0t64.install 1970-01-01 00:00:00.000000000 +0000
+++ genometools-1.6.5+ds/debian/libgenometools0t64.install 2023-09-19 21:22:02.000000000 +0000
@@ -0,0 +1 @@
+lib/libgenometools.so.0 usr/lib
diff -Nru genometools-1.6.5+ds/debian/libgenometools0t64.lintian-overrides genometools-1.6.5+ds/debian/libgenometools0t64.lintian-overrides
--- genometools-1.6.5+ds/debian/libgenometools0t64.lintian-overrides 1970-01-01 00:00:00.000000000 +0000
+++ genometools-1.6.5+ds/debian/libgenometools0t64.lintian-overrides 2024-02-28 16:15:24.000000000 +0000
@@ -0,0 +1 @@
+libgenometools0t64: package-name-doesnt-match-sonames libgenometools0

--
Steve Langasek Give me a lever long enough and a Free OS Debian Developer to set it on, and I can move the world. Ubuntu Developer https://www.debian.org/ slangasek@ubuntu.com vorlon@debian.org

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diff -Nru genometools-1.6.5+ds/debian/changelog genometools-1.6.5+ds/debian/changelog
--- genometools-1.6.5+ds/debian/changelog 2023-10-25 22:08:09.000000000 +0000
+++ genometools-1.6.5+ds/debian/changelog 2024-04-27 01:41:52.000000000 +0000
@@ -1,3 +1,17 @@
+genometools (1.6.5+ds-2.2) unstable; urgency=medium
+
+ * Non-maintainer upload.
+ * Remove wrong hard-coded test dep.
+
+ -- Steve Langasek <vorlon@debian.org> Sat, 27 Apr 2024 01:41:52 +0000
+
+genometools (1.6.5+ds-2.1) unstable; urgency=medium
+
+ * No

Hi Steve,

NMU for genometools 1.6.5+ds-2.1 acknowledged in the VCS, with a
minor change to un-shadow Lukas Märdian experimental NMU earlier
this year. Thanks for your work on the hairy time_t transition!

Have a nice day, :)
--
.''`. Étienne Mollier <emollier@debian.org>
: :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da
`. `' sent from /dev/pts/0, please excuse my verbosity
`- on air: Laurent Garnier - Last tribute from the 20th c…

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