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Package: apt,python3.11-minimal
Severity: normal

Control: affects -1 python3-scrapy

During piuparts testing of python3-scrapy piuparts asked apt to remove packages including python3* and libexpat1, and libexpat1 was removed before e.g. python3.11-minimal which depends on it, with dpkg printing a warning about this fact. But as prerm of python3.11-minimal needs libexpat1, prerm and the apt transaction failed with "/usr/bin/python3: error while loading shared libraries: libexpat.so.1: cannot open shared object file". The full log is currently available at https://piuparts.debian.org/sid/fail/python3-scrapy_2.11.1-1.log and I'm also attaching it. The relevant part is the last one.

There are several additional things to note:

1. "python3.11-minimal depends on libexpat1" is not the only dependency problem reported for the transaction, there are several other problems reported later, all involving python3{,.11} subpackages.
2. This happened during the t64 transition, involved versions of src:expat and src:python3-defaults are older than that while src:python3.11 (= 3.11.8-2) is related to it.
3. piuparts asked apt to remove (among other packages) libssl3t64 and install libssl3:amd64=3.1.5-1, but libssl3* aren't related to libexpat1, python3.11-minimal also doesn't depend on them.


-- System Information:
Debian Release: trixie/sid
APT prefers unstable-debug
APT policy: (500, 'unstable-debug'), (500, 'testing-debug'), (500, 'unstable'), (500, 'testing'), (101, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 6.7.7-amd64 (SMP w/4 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Start: 2024-03-01 10:02:29 GMT

Package: python3-scrapy
Source: python-scrapy
Version: 2.11.1-1
Installed-Size: 1052
Maintainer: Debian Python Team <team+python@tracker.debian.org>
Architecture: all
Depends: python3-lxml, python3-pydispatch, python3-cryptography (>= 36.0.0), python3-cssselect, python3-itemadapter, python3-itemloaders, python3-openssl, python3-packaging, python3-parsel (>= 1.8.1), python3-pkg-resources, python3-protego, python3-
queuelib, python3-service-identity, python3-tldextract, python3-twisted, python3-w3lib, python3-zope.interface, python3:any
Recommends: ipython3, python3-brotli, python3-pil
Suggests: python3-boto3, python3-botocore, python-scrapy-doc (= 2.11.1-1) Description: Python web scraping and crawling framework (Python 3)
Homepage: https://scrapy.org/
Description-md5: de81941edea93a8d65f470aa9a6bbc8a
Section: python
Priority: optional
Filename: pool/main/p/python-scrapy/python3-scrapy_2.11.1-1_all.deb
Size: 259188
MD5sum: 74540053503bba92acf4db683413d6c7
SHA256: 449a3cce5c5ebf1fe93141cecc0088e14a7f2997eacb20bf9dd14b27048e2edf

Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --
allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt python3-
scrapy=2.11.1-1
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile.
0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong.
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 1.3.1~202401311836~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.
org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt python3-scrapy=2.11.1-1
0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64
0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpq3za2o4e
0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpq3za2o4e
0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz']
0m0.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz']
0m0.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e/proc']
0m0.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e/proc']
0m0.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e/dev/pts']
0m0.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e/dev/pts']
0m0.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e/dev/ptmx']
0m0.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e/dev/ptmx']
0m0.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e/dev/console']
0m0.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e/dev/console']
0m0.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e/dev/shm']
0m0.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e/dev/shm']
0m0.6s DEBUG: sources.list:
deb http://deb.debian.org/debian/ sid main
0m0.6s DEBUG: Created policy-rc.d and chmodded it.
0m0.6s DEBUG: Created resolv.conf.
0m0.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmpq3za2o4e/tmp/scripts/
0m0.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpq3za2o4e/tmp/scripts/
0m0.6s INFO: Running scripts post_chroot_unpack
0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e', 'apt-get', 'update']
0m4.9s DUMP:
Get:1 http://deb.debian.org/debian sid InRelease [198 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9906 kB]
Get:3 http://deb.debian.org/debian sid/main Translation-en [7213 kB]
Fetched 17.3 MB in 3s (5555 kB/s)
Reading package lists...
0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e', 'apt-get', 'update']
0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e', 'apt-get', '-yf', 'dist-upgrade']
0m10.1s DUMP:
Reading package lists...
Building dependency tree...
Calculating upgrade...
The following packages will be REMOVED:
libcom-err2 libext2fs2 libgnutls30 libss2 libuuid1
The following NEW packages will be installed:
libcom-err2t64 libext2fs2t64 libgnutls30t64 libss2t64 libuuid1t64
The following packages will be upgraded:
apt bsdutils e2fsprogs libapt-pkg6.0t64 libblkid1 libc-bin libc6 libmount1
libpam-modules libpam-modules-bin libpam-runtime libsmartcols1 logsave mount
sysvinit-utils util-linux
16 upgraded, 5 newly installed, 5 to remove and 0 not upgraded.
Need to get 10.4 MB of archives.
After this operation, 7168 B disk space will be freed.
Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.39.3-6.1 [97.0 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 libss2t64 amd64 1.47.0-2.3 [24.9 kB]
Get:3 http://deb.debian.org/debian sid/main amd64 libcom-err2t64 amd64 1.47.0-2.3 [20.2 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-15.1 [2752 kB]
Get:5 http://deb.debian.org/debian sid/main amd64 libext2fs2t64 amd64 1.47.0-2.3 [206 kB]
Get:6 http://deb.debian.org/debian sid/main amd64 libuuid1t64 amd64 2.39.3-6.1 [30.0 kB]
Get:7 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.39.3-6.1 [1231 kB]
Get:8 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.0-2.3 [19.9 kB]
Get:9 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.0-2.3 [571 kB]
Get:10 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.7.13+b1 [984 kB]
Get:11 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.3-1.1 [1425 kB]
Get:12 http://deb.debian.org/debian sid/main amd64 apt amd64 2.7.13+b1 [1368 kB]
Get:13 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-15.1 [602 kB]
Get:14 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.08-7 [32.2 kB]
Get:15 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.3-6 [54.2 kB]
Get:16 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.3-6 [260 kB]
Get:17 http://deb.debian.org/debian sid/main amd64 mount amd64 2.39.3-6.1 [143 kB]
Get:18 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.3-6 [140 kB]
Get:19 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.39.3-6.1 [159 kB]
Get:20 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.39.3-6.1 [191 kB]
Get:21 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.39.3-6.1 [116 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 10.4 MB in 0s (47.0 MB/s)
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Setting up bsdutils (1:2.39.3-6.1) ...
dpkg: libss2:amd64: dependency problems, but removing anyway as you requested:
e2fsprogs depends on libss2 (>= 1.38).

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dpkg: libuuid1:amd64: dependency problems, but removing anyway as you requested:
util-linux depends on libuuid1 (>= 2.16).
e2fsprogs depends on libuuid1 (>= 2.16).

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dpkg: libgnutls30:amd64: dependency problems, but removing anyway as you requested:
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dpkg: warning: unable to delete old directory '/lib/lsb/init-functions.d': Directory not empty
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Processing triggers for libc-bin (2.37-15.1) ...
0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e', 'apt-get', '-yf', 'dist-upgrade']
0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m10.5s DUMP:
4422799932b3309b6f5de1972870b61f -
0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m10.5s INFO: Running scripts post_setup
0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq3za2o4e', 'tmp/scripts/post_setup_dummy_users']
0m11.7s DUMP:
useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999
useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999
useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999
useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999

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