cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile -I/<<PKGBUILDDIR>>/src/cxx/libraries/sfile -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/gb.tab.c: In function ‘yyparse’:
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/gb.tab.c:1096:16: error: implicit declaration of function ‘yylex’ [-Werror=implicit-function-declaration]
1096 | yychar = yylex ();
| ^~~~~
gb.y: In function ‘yyerror’:
gb.y:291:70: error: implicit declaration of function ‘linenumber’ [-Werror=implicit-function-declaration]
gb.y: In function ‘add_to_seq’:
gb.y:402:9: warning: unused variable ‘new_buf’ [-Wunused-variable] /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c: In function ‘main’: /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c:17:10: error: implicit declaration of function ‘strcmp’ [-Werror=implicit-function-declaration]
17 | if (!strcmp(argv[opt], "-d")) {
| ^~~~~~ /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c:8:1: note: include ‘<string.h>’ or provide a declaration of ‘strcmp’
7 | #include "gb.tab.h"
+++ |+#include <string.h>
8 |
seqreader.l: In function ‘seq_read’:
seqreader.l:270:9: warning: unused variable ‘code’ [-Wunused-variable] /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/lexer.c: At top level:
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/lexer.c:1864:16: warning: ‘input’ defined but not used [-Wunused-function]
1864 | static int input (void)
| ^~~~~ /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/lexer.c:1821:17: warning: ‘yyunput’ defined but not used [-Wunused-function]
1821 | static void yyunput (int c, char * yy_bp )
| ^~~~~~~ /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c: In function ‘seq_print’:
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:265:14: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=]
265 | printf("%9d", char_counter + 1);
| ^~~~~ ~~~~~~~~~~~~~~~~
| |
| long int /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:212:15: warning: variable ‘date’ set but not used [-Wunused-but-set-variable]
212 | char *top, *date;
| ^~~~
cc1: some warnings being treated as errors
make[3]: *** [src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build.make:90: src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/gbread.c.o] Error 1
tags -1 patchBug #1066653 [src:prime-phylo] prime-phylo: FTBFS: gb.tab.c:1096:16: error: implicit declaration of function ‘yylex’ [-Werror=implicit-function-declaration]
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