• Bug#1066422: plastimatch: FTBFS: ld: cannot find -lnsl: No such file or

    From Lucas Nussbaum@21:1/5 to All on Wed Mar 13 13:20:07 2024
    Source: plastimatch
    Version: 1.9.4+dfsg.1-2
    Severity: serious
    Justification: FTBFS
    Tags: trixie sid ftbfs
    User: lucas@debian.org
    Usertags: ftbfs-20240313 ftbfs-trixie

    Hi,

    During a rebuild of all packages in sid, your package failed to build
    on amd64.


    Relevant part (hopefully):
    /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -
    rdynamic -fopenmp CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -o ../../../landmark_diff -L/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/<<
    PKGBUILDDIR>>/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9
    ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.
    so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /
    usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.
    so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2
    -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-
    gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../.
    ./libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /
    usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.
    so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.22 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.22 /usr/lib/
    x86_64-linux-gnu/libgdcmIOD.so.3.0.22 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.22 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.22 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-
    gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/
    libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.
    so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/
    libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.
    so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.
    1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1
    /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-
    linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/
    libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.
    so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.
    so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /
    usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.
    so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/
    libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-
    linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.
    1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_
    64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-
    gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -
    lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2
    /usr/bin/ld: cannot find -lnsl: No such file or directory
    collect2: error: ld returned 1 exit status


    The full build log is available from: http://qa-logs.debian.net/2024/03/13/plastimatch_1.9.4+dfsg.1-2_unstable.log

    All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240313;users=lucas@debian.org
    or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240313&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

    A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

    If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects

    If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Michael R. Crusoe@21:1/5 to All on Tue Mar 19 15:40:01 2024
    Control: tag -1 pending

    Hello,

    Bug #1066422 in dcmtk reported by you has been fixed in the
    Git repository and is awaiting an upload. You can see the commit
    message below and you can check the diff of the fix at:

    https://salsa.debian.org/med-team/dcmtk/-/commit/7378bd088ea12ea28c1b716bc6a46561597c03b1

    ------------------------------------------------------------------------ d/control: add explicit dependency on libnsl-dev. Closes: #1066422. ------------------------------------------------------------------------

    (this message was generated automatically)
    --
    Greetings

    https://bugs.debian.org/1066422

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Debian Bug Tracking System@21:1/5 to All on Tue Mar 19 15:40:01 2024
    Processing control commands:

    tag -1 pending
    Bug #1066422 [libdcmtk-dev] libdcmtk-dev: missing dependency on libnsl-dev
    Bug #1066423 [libdcmtk-dev] libdcmtk-dev: missing dependency on libnsl-dev Added tag(s) pending.
    Added tag(s) pending.

    --
    1066422: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1066422
    1066423: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1066423
    Debian Bug Tracking System
    Contact owner@bugs.debian.org with problems

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)