Source: seqprep
Version: 1.3.2-8
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas@debian.org
Usertags: ftbfs-20240313 ftbfs-trixie ftbfs-impfuncdef

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

This is most likely caused by a change in dpkg 1.22.6, that enabled -Werror=implicit-function-declaration. For more information, see https://wiki.debian.org/qa.debian.org/FTBFS#A2024-03-13_-Werror.3Dimplicit-function-declaration

Relevant part (hopefully):

cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu90 -c -Wall -O0 -g -std=c99 stdaln.c -o stdaln.o
SeqPrep.c: In function ‘main’:
SeqPrep.c:166:15: error: implicit declaration of function ‘getopt’ [-Werror=implicit-function-declaration]
166 | while( (ich=getopt( argc, argv, "f:r:1:2:3:4:q:A:s:y:B:O:E:x:M:N:L:o:m:b:w:W:p:P:X:Q:t:e:Z:n:S6ghz" )) != -1 ) {
| ^~~~~~
cc1: some warnings being treated as errors
make[2]: *** [Makefile:18: SeqPrep.o] Error 1

The full build log is available from: http://qa-logs.debian.net/2024/03/13/seqprep_1.3.2-8_unstable.log

All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240313;users=lucas@debian.org
or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240313&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.

--- SoupGate-Win32 v1.05
* Origin: fsxNet Usenet Gateway (21:1/5)

Processing control commands:

tag -1 pending

Bug #1066363 [src:seqprep] seqprep: FTBFS: SeqPrep.c:166:15: error: implicit declaration of function ‘getopt’ [-Werror=implicit-function-declaration]
Added tag(s) pending.

--
1066363: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1066363
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems

--- SoupGate-Win32 v1.05
* Origin: fsxNet Usenet Gateway (21:1/5)

Control: tag -1 pending

Hello,

Bug #1066363 in seqprep reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/seqprep/-/commit/bd38f750ddab564da9f7371d96ac6930461c4b77

------------------------------------------------------------------------ fix-declarations.patch: new: fix ftbfs.

Closes: #1066363 ------------------------------------------------------------------------

(this message was generated automatically)
--
Greetings

https://bugs.debian.org/1066363

--- SoupGate-Win32 v1.05
* Origin: fsxNet Usenet Gateway (21:1/5)

This is a multi-part message in MIME format...

Your message dated Thu, 14 Mar 2024 20:46:58 +0000
with message-id <E1rkryc-00DrFz-SR@fasolo.debian.org>
and subject line Bug#1066363: fixed in seqprep 1.3.2-9
has caused the Debian Bug report #1066363,
regarding seqprep: FTBFS: SeqPrep.c:166:15: error: implicit declaration of function ‘getopt’ [-Werror=implicit-function-declaration]
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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--
1066363: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1066363
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems

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