Control: tags -1 help
Hi again,
I hope to approach the last remaining Pandas issue for the qiime
ecosystem. As it has become obvious in the q2-types package I'm now
facing pretty similar errors when running the q2-quality-control
package which can be seen in full length in Salsa-CI[3] and contains
errors like:
E AttributeError: 'ProvenancePath' object has no attribute '_drv'
E AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
E AttributeError: 'ProvenancePath' object has no attribute '_str'
E AttributeError: 'OutPath' object has no attribute '_str'
This all goes back to the qiime package but I admit I have no idea
how to fix this.
Kind regards
Andreas.
[3]
https://salsa.debian.org/med-team/q2-quality-control/-/jobs/5320775#L700
Am Sat, Feb 17, 2024 at 11:36:41AM +0100 schrieb Andreas Tille:
Hi,
as reported in a qiime2 issue[1] there is some problem with Python3.12
in the tests of the q2-* packages which are all using the qiime package.
This problem is currently hidden from the tests made by Python3.12
porters but it became obvious now on Salsa CI[2]. I tried to fiddle
around a bit with the qiime code but with no success at all. Any help
would be welcome.
Kind regards
Andreas.
[1] https://github.com/qiime2/qiime2/issues/751
[2] https://salsa.debian.org/med-team/q2-types/-/jobs/5313640#L900
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