Control: tags -1 help
Hi again,
thanks again for your great help. I admit I need some help for q2-types as well. While log in the bug report vanished you will easily find things like
TypeError: read_csv() got an unexpected keyword argument 'squeeze'
when trying to build the package.
I've found an issue at pandas upstream[1] which inspired me to the patch
--- a/q2_types/sample_data/tests/test_transformer.py
+++ b/q2_types/sample_data/tests/test_transformer.py
@@ -28,8 +28,8 @@ class TestTransformers(TestPluginBase):
obs = transformer(exp)
# Squeeze equals true to return series instead of dataframe
- obs = pd.read_csv(str(obs), sep='\t', header=0, index_col=0,
- squeeze=True)
+ obs = pd.read_csv(str(obs), sep='\t', header=0, index_col=0)
+ obs.squeeze("columns")
assert_series_equal(exp, obs)
which is obviously wrong since it leads to
# Squeeze equals true to return series instead of dataframe
obs = pd.read_csv(str(obs), sep='\t', header=0, index_col=0)
obs.squeeze("columns")
assert_series_equal(exp, obs)
Probably a better solution can be found at stackoverflow[2] to use DataFrame.squeeze('columns') but I'm simply lacking an example how to use
this.
Finally this is not the only error and I would appreciate any helping hint
(