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LINUX.DEBIAN.BUGS.RC
Bug#1062344: htslib: NMU diff for 64-bit time_t transition (2/3)
From
Graham Inggs
@21:1/5 to
All
on Thu Feb 1 07:10:01 2024
[continued from previous message]
- regidx_parse_tab@HTSLIB_1.2.1 1.17
-
regidx_parse_vcf@HTSLIB_1.10
1.17
-
regidx_push@HTSLIB_1.10
1.17
- regidx_seq_names@HTSLIB_1.2.1 1.17
- regidx_seq_nregs@HTSLIB_1.2.1 1.17
-
regitr_copy@HTSLIB_1.10
1.17
-
regitr_destroy@HTSLIB_1.10
1.17
-
regitr_init@HTSLIB_1.10
1.17
-
regitr_loop@HTSLIB_1.10
1.17
-
regitr_overlap@HTSLIB_1.10
1.17
-
regitr_reset@HTSLIB_1.10
1.17
- reset_metrics@Base 1.16
- sam_cap_mapq@HTSLIB_1.4 1.17
- sam_format1@HTSLIB_1.0 1.17
-
sam_hdr_add_line@HTSLIB_1.10
1.17
- sam_hdr_add_lines@HTSLIB_1.0 1.17
-
sam_hdr_add_pg@HTSLIB_1.10
1.17
- sam_hdr_change_HD@HTSLIB_1.7 1.17
-
sam_hdr_count_lines@HTSLIB_1.10
1.17
-
sam_hdr_destroy@HTSLIB_1.10
1.17
- sam_hdr_dup@HTSLIB_1.0 1.17
- sam_hdr_dup_sdict@Base 1.16
- sam_hdr_fill_hrecs@Base 1.16
-
sam_hdr_find_line_id@HTSLIB_1.10
1.17
-
sam_hdr_find_line_pos@HTSLIB_1.10
1.17
-
sam_hdr_find_tag_id@HTSLIB_1.10
1.17
-
sam_hdr_find_tag_pos@HTSLIB_1.10
1.17
- sam_hdr_incr_ref@HTSLIB_1.0 1.17
-
sam_hdr_init@HTSLIB_1.10
1.17
- sam_hdr_length@HTSLIB_1.0 1.17
-
sam_hdr_line_index@HTSLIB_1.10
1.17
-
sam_hdr_line_name@HTSLIB_1.10
1.17
-
sam_hdr_name2tid@HTSLIB_1.10
1.17
-
sam_hdr_nref@HTSLIB_1.10
1.17
- sam_hdr_parse@HTSLIB_1.0 1.17
-
sam_hdr_pg_id@HTSLIB_1.10
1.17
- sam_hdr_read@HTSLIB_1.0 1.17
- sam_hdr_rebuild@Base 1.16
-
sam_hdr_remove_except@HTSLIB_1.10
1.17
-
sam_hdr_remove_line_id@HTSLIB_1.10
1.17
-
sam_hdr_remove_line_pos@HTSLIB_1.10
1.17
-
sam_hdr_remove_lines@HTSLIB_1.10
1.17
-
sam_hdr_remove_tag_id@HTSLIB_1.10
1.17
- sam_hdr_str@HTSLIB_1.0 1.17
-
sam_hdr_tid2len@HTSLIB_1.10
1.17
-
sam_hdr_tid2name@HTSLIB_1.10
1.17
-
sam_hdr_update_line@HTSLIB_1.10
1.17
- sam_hdr_update_target_arrays@Base 1.16
- sam_hdr_write@HTSLIB_1.0 1.17
- sam_hrecs_find_key@Base 1.16
- sam_hrecs_find_rg@Base 1.16
- sam_hrecs_find_type_id@Base 1.16
- sam_hrecs_free@Base 1.16
- sam_hrecs_group_order@Base 1.16
- sam_hrecs_new@Base 1.16
- sam_hrecs_rebuild_text@Base 1.16
- sam_hrecs_remove_key@Base 1.16
- sam_hrecs_sort_order@Base 1.16
-
sam_idx_init@HTSLIB_1.10
1.17
-
sam_idx_save@HTSLIB_1.10
1.17
- sam_index_build2@HTSLIB_1.3 1.17
- sam_index_build3@HTSLIB_1.4 1.17
- sam_index_build@HTSLIB_1.3 1.17
- sam_index_load2@HTSLIB_1.3 1.17
-
sam_index_load3@HTSLIB_1.10
1.17
- sam_index_load@HTSLIB_1.0 1.17
- sam_itr_queryi@HTSLIB_1.0 1.17
- sam_itr_querys@HTSLIB_1.0 1.17
-
sam_itr_regarray@HTSLIB_1.10
1.17
- sam_itr_regions@HTSLIB_1.7 1.17
- sam_open_mode@HTSLIB_1.0 1.17
- sam_open_mode_opts@HTSLIB_1.3 1.17
- sam_parse1@HTSLIB_1.0 1.17
-
sam_parse_cigar@HTSLIB_1.12
1.17
-
sam_parse_region@HTSLIB_1.10
1.17
-
sam_passes_filter@HTSLIB_1.12
1.17
- sam_prob_realn@HTSLIB_1.4 1.17
- sam_read1@HTSLIB_1.0 1.17
- sam_realloc_bam_data@Base 1.16
- sam_set_thread_pool@Base 1.16
- sam_set_threads@Base 1.16
- sam_state_destroy@Base 1.16
- sam_write1@HTSLIB_1.0 1.17
- seq_nt16_int@HTSLIB_1.2.1 1.17
- seq_nt16_str@HTSLIB_1.0 1.17
- seq_nt16_table@HTSLIB_1.0 1.17
- string_alloc@Base 1.16
- string_dup@Base 1.16
- string_ndup@Base 1.16
- string_pool_create@Base 1.16
- string_pool_destroy@Base 1.16
- stringify_argv@HTSLIB_1.0 1.17
- tbx_conf_bed@HTSLIB_1.0 1.17
- tbx_conf_gff@HTSLIB_1.0 1.17
- tbx_conf_psltbl@HTSLIB_1.0 1.17
- tbx_conf_sam@HTSLIB_1.0 1.17
- tbx_conf_vcf@HTSLIB_1.0 1.17
- tbx_destroy@HTSLIB_1.0 1.17
- tbx_index@HTSLIB_1.0 1.17
- tbx_index_build2@HTSLIB_1.3 1.17
- tbx_index_build3@HTSLIB_1.4 1.17
- tbx_index_build@HTSLIB_1.0 1.17
- tbx_index_load2@HTSLIB_1.3 1.17
-
tbx_index_load3@HTSLIB_1.10
1.17
- tbx_index_load@HTSLIB_1.0 1.17
- tbx_name2id@HTSLIB_1.0 1.17
- tbx_parse1@Base 1.16
- tbx_readrec@HTSLIB_1.0 1.17
- tbx_seqnames@HTSLIB_1.0 1.17
- tokenise_search_path@Base 1.16
- vcf_format@HTSLIB_1.0 1.17
- vcf_hdr_read@HTSLIB_1.0 1.17
- vcf_hdr_write@HTSLIB_1.0 1.17
-
vcf_open_mode@HTSLIB_1.11
1.17
- vcf_parse@HTSLIB_1.0 1.17
- vcf_read@HTSLIB_1.0 1.17
- vcf_write@HTSLIB_1.0 1.17
- vcf_write_line@HTSLIB_1.0 1.17
- zlib_mem_inflate@Base 1.16
diff -Nru htslib-1.18+ds/debian/libhts3t64.install htslib-1.18+ds/debian/libhts3t64.install
--- htslib-1.18+ds/debian/libhts3t64.install 1970-01-01 00:00:00.000000000 +0000
+++ htslib-1.18+ds/debian/libhts3t64.install 2022-10-19 14:55:31.000000000 +0000
@@ -0,0 +1,3 @@
+usr/lib/${DEB_HOST_MULTIARCH}/libhts.so.* usr/lib/${DEB_HOST_MULTIARCH} +usr/lib/${DEB_HOST_MULTIARCH}/htslib usr/lib/${DEB_HOST_MULTIARCH} +usr/share/man/man5/* usr/share/man/man5
diff -Nru htslib-1.18+ds/debian/libhts3t64.lintian-overrides htslib-1.18+ds/debian/libhts3t64.lintian-overrides
--- htslib-1.18+ds/debian/libhts3t64.lintian-overrides 1970-01-01 00:00:00.000000000 +0000
+++ htslib-1.18+ds/debian/libhts3t64.lintian-overrides 2024-02-01 05:58:50.000000000 +0000
@@ -0,0 +1 @@
+libhts3t64: package-name-doesnt-match-sonames libhts3
diff -Nru htslib-1.18+ds/debian/libhts3t64.manpages htslib-1.18+ds/debian/libhts3t64.manpages
--- htslib-1.18+ds/debian/libhts3t64.manpages 1970-01-01 00:00:00.000000000 +0000
+++ htslib-1.18+ds/debian/libhts3t64.manpages 2022-07-03 07:14:15.000000000 +0000
@@ -0,0 +1 @@
+htslib-s3
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