• Bug#1062240: libbpp-seq: NMU diff for 64-bit time_t transition (8/15)

    From Steve Langasek@21:1/5 to All on Wed Jan 31 21:20:02 2024
    [continued from previous message]

    - _ZTv0_n72_NK3bpp13CodonAlphabet7getWordERKSt6vectorIiSaIiEEm@Base 2.4.1
    - _ZTv0_n72_NK3bpp15NexusIOSequence13readSequencesERSiPKNS_8AlphabetE@Base 2.4.1
    - _ZTv0_n72_NK3bpp17AbstractOSequence14writeAlignmentERSoRKNS_13SiteContainerE@Base 2.4.1
    - _ZTv0_n72_NK3bpp19SimpleIndexDistance11isSymmetricEv@Base 2.4.1
    - _ZTv0_n72_NK3bpp19VectorSiteContainer11hasSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
    - _ZTv0_n72_NK3bpp20MapSequenceContainer11hasSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
    - _ZTv0_n72_NK3bpp21GranthamAAVolumeIndex14getIndexVectorEv@Base 2.4.1
    - _ZTv0_n72_NK3bpp22DefaultNucleotideScore11isSymmetricEv@Base 2.4.1
    - _ZTv0_n72_NK3bpp23GranthamAAPolarityIndex14getIndexVectorEv@Base 2.4.1
    - _ZTv0_n72_NK3bpp23VectorSequenceContainer11hasSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
    - _ZTv0_n72_NK3bpp24MiyataAAChemicalDistance11isSymmetricEv@Base 2.4.1
    - _ZTv0_n72_NK3bpp26GranthamAAChemicalDistance11isSymmetricEv@Base 2.4.1
    - _ZTv0_n72_NK3bpp29CompressedVectorSiteContainer11hasSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
    - _ZTv0_n72_NK3bpp32AbstractSequencePositionIteratorneERKNS_24SequencePositionIteratorE@Base 2.4.1
    - _ZTv0_n72_NK3bpp4DCSE13readSequencesERSiPKNS_8AlphabetE@Base 2.4.1
    - _ZTv0_n72_NK3bpp4Mase14writeSequencesERSoRKNS_17SequenceContainerE@Base 2.4.1 - _ZTv0_n72_NK3bpp5Fasta12nextSequenceERSiRNS_8SequenceE@Base 2.4.1
    - _ZTv0_n72_NK3bpp5Fasta13writeSequenceERSoRKNS_8SequenceE@Base 2.4.1
    - _ZTv0_n72_NK3bpp5Fasta14writeSequencesERSoRKNS_17SequenceContainerE@Base 2.4.1
    - _ZTv0_n72_NK3bpp6Phylip13readSequencesERSiPKNS_8AlphabetE@Base 2.4.1
    - _ZTv0_n72_NK3bpp6Phylip14writeAlignmentERSoRKNS_13SiteContainerE@Base 2.4.1
    - _ZTv0_n72_NK3bpp7Clustal13readSequencesERSiPKNS_8AlphabetE@Base 2.4.1
    - _ZTv0_n72_NK3bpp7Clustal14writeAlignmentERSoRKNS_13SiteContainerE@Base 2.4.1 - _ZTv0_n72_NK3bpp8BLOSUM5011isSymmetricEv@Base 2.4.1
    - _ZTv0_n72_NK3bpp9Stockholm14writeAlignmentERSoRKNS_13SiteContainerE@Base 2.4.1
    - _ZTv0_n80_N3bpp12SequenceMask22beforeSequenceInsertedERKNS_24SymbolListInsertionEventE@Base 2.4.1
    - _ZTv0_n80_N3bpp13BasicSequence10setToSizeREm@Base 2.4.1
    - _ZTv0_n80_N3bpp15SequenceQuality22beforeSequenceInsertedERKNS_24SymbolListInsertionEventE@Base 2.4.1
    - _ZTv0_n80_N3bpp19VectorSiteContainer11addSequenceERKNS_8SequenceEb@Base 2.4.1 - _ZTv0_n80_N3bpp20MapSequenceContainer11addSequenceERKNS_8SequenceEb@Base 2.4.1
    - _ZTv0_n80_N3bpp22SequenceWithAnnotation10setToSizeREm@Base 2.4.1
    - _ZTv0_n80_N3bpp23VectorSequenceContainer11addSequenceERKNS_8SequenceEb@Base 2.4.1
    - _ZTv0_n80_N3bpp24AlignedSequenceContainer11addSequenceERKNS_8SequenceEb@Base 2.4.1
    - _ZTv0_n80_N3bpp29CompressedVectorSiteContainer11addSequenceERKNS_8SequenceEb@Base 2.4.1
    - _ZTv0_n80_NK3bpp12EdSymbolList8toStringB5cxx11Ev@Base 2.4.1
    - _ZTv0_n80_NK3bpp12WordAlphabet7getWordERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEm@Base 2.4.1
    - _ZTv0_n80_NK3bpp13CodonAlphabet7getWordERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEm@Base 2.4.1
    - _ZTv0_n80_NK3bpp15BasicSymbolList8toStringB5cxx11Ev@Base 2.4.1
    - _ZTv0_n80_NK3bpp15NexusIOSequence13readSequencesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPKNS_8AlphabetE@Base 2.4.1
    - _ZTv0_n80_NK3bpp17AbstractOSequence14writeAlignmentERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_13SiteContainerEb@Base 2.4.1
    - _ZTv0_n80_NK3bpp17AbstractOSequence14writeSequencesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_17SequenceContainerEb@Base 2.4.1
    - _ZTv0_n80_NK3bpp18AbstractOAlignment14writeAlignmentERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_13SiteContainerEb@Base 2.4.1
    - _ZTv0_n80_NK3bpp4DCSE13readSequencesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPKNS_8AlphabetE@Base 2.4.1
    - _ZTv0_n80_NK3bpp4Mase14writeSequencesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_17SequenceContainerEb@Base 2.4.1
    - _ZTv0_n80_NK3bpp5Fasta14writeSequencesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_17SequenceContainerEb@Base 2.4.1
    - _ZTv0_n80_NK3bpp6Phylip13readSequencesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPKNS_8AlphabetE@Base 2.4.1
    - _ZTv0_n80_NK3bpp6Phylip14writeAlignmentERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_13SiteContainerEb@Base 2.4.1
    - _ZTv0_n80_NK3bpp7Clustal13readSequencesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPKNS_8AlphabetE@Base 2.4.1
    - _ZTv0_n80_NK3bpp7Clustal14writeAlignmentERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_13SiteContainerEb@Base 2.4.1
    - _ZTv0_n80_NK3bpp9Stockholm14writeAlignmentERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_13SiteContainerEb@Base 2.4.1
    - _ZTv0_n88_N3bpp12EdSymbolList10addElementERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
    - _ZTv0_n88_N3bpp12SequenceMask21afterSequenceInsertedERKNS_24SymbolListInsertionEventE@Base 2.4.1
    - _ZTv0_n88_N3bpp13BasicSequence10setToSizeLEm@Base 2.4.1
    - _ZTv0_n88_N3bpp15BasicSymbolList10addElementERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
    - _ZTv0_n88_N3bpp15SequenceQuality21afterSequenceInsertedERKNS_24SymbolListInsertionEventE@Base 2.4.1
    - _ZTv0_n88_N3bpp19SequenceWithQuality10addElementERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
    - _ZTv0_n88_N3bpp19VectorSiteContainer11setSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_8SequenceEb@Base 2.4.1
    - _ZTv0_n88_N3bpp20MapSequenceContainer11setSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_8SequenceEb@Base 2.4.1
    - _ZTv0_n88_N3bpp22SequenceWithAnnotation10setToSizeLEm@Base 2.4.1
    - _ZTv0_n88_N3bpp23VectorSequenceContainer11setSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_8SequenceEb@Base 2.4.1
    - _ZTv0_n88_N3bpp24AlignedSequenceContainer11setSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_8SequenceEb@Base 2.4.1
    - _ZTv0_n88_N3bpp29CompressedVectorSiteContainer11setSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_8SequenceEb@Base 2.4.1
    - _ZTv0_n88_NK3bpp12WordAlphabet12getNPositionEim@Base 2.4.1
    - _ZTv0_n88_NK3bpp13CodonAlphabet12getNPositionEim@Base 2.4.1
    - _ZTv0_n96_N3bpp12EdSymbolList10addElementEmRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
    - _ZTv0_n96_N3bpp12SequenceMask21beforeSequenceDeletedERKNS_23SymbolListDeletionEventE@Base 2.4.1
    - _ZTv0_n96_N3bpp15BasicSymbolList10addElementEmRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
    - _ZTv0_n96_N3bpp15SequenceQuality21beforeSequenceDeletedERKNS_23SymbolListDeletionEventE@Base 2.4.1
    - _ZTv0_n96_N3bpp19SequenceWithQuality10addElementEmRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
    - _ZTv0_n96_N3bpp19VectorSiteContainer14removeSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
    - _ZTv0_n96_N3bpp20MapSequenceContainer14removeSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
    - _ZTv0_n96_N3bpp23VectorSequenceContainer14removeSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
    - _ZTv0_n96_N3bpp29CompressedVectorSiteContainer14removeSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
    - _ZTv0_n96_NK3bpp12WordAlphabet12getPositionsEi@Base 2.4.1
    - _ZTv0_n96_NK3bpp13CodonAlphabet12getPositionsEi@Base 2.4.1
    - _ZTv0_n96_NK3bpp19StandardGeneticCode21getNumberOfStopCodonsEv@Base 2.4.1
    - _ZTv0_n96_NK3bpp28MoldMitochondrialGeneticCode21getNumberOfStopCodonsEv@Base 2.4.1
    - _ZTv0_n96_NK3bpp29YeastMitochondrialGeneticCode21getNumberOfStopCodonsEv@Base 2.4.1
    - _ZTv0_n96_NK3bpp32AscidianMitochondrialGeneticCode21getNumberOfStopCodonsEv@Base 2.4.1
    - _ZTv0_n96_NK3bpp34EchinodermMitochondrialGeneticCode21getNumberOfStopCodonsEv@Base 2.4.1
    - _ZTv0_n96_NK3bpp34VertebrateMitochondrialGeneticCode21getNumberOfStopCodonsEv@Base 2.4.1
    - _ZTv0_n96_NK3bpp36InvertebrateMitochondrialGeneticCode21getNumberOfStopCodonsEv@Base 2.4.1
    - _ZeqRKN3bpp4SiteES2_@Base 2.4.1
    - _ZltRKN3bpp4SiteES2_@Base 2.4.1
    diff -Nru libbpp-seq-2.4.1/debian/libbpp-seq12t64.amd64 libbpp-seq-2.4.1/debian/libbpp-seq12t64.amd64
    --- libbpp-seq-2.4.1/debian/libbpp-seq12t64.amd64 1970-01-01 00:00:00.000000000 +0000
    +++ libbpp-seq-2.4.1/debian/libbpp-seq12t64.amd64 2023-08-13 11:21:18.000000000 +0000
    @@ -0,0 +1,3319 @@
    +libbpp-seq.so.12 libbpp-seq12 #MINVER#
    +* Build-Depends-Package: libbpp-seq-dev
    + _ZN3bpp10BowkerTestD0Ev@Base 2.4.1
    + _ZN3bpp10BowkerTestD1Ev@Base 2.4.1
    + _ZN3bpp10MultiRangeImE10restrictToERKNS_5RangeImEE@Base 2.4.1
    + _ZN3bpp10MultiRangeImE12filterWithinERKNS_5RangeImEE@Base 2.4.1
    + _ZN3bpp10MultiRangeImE5clearEv@Base 2.4.1
    + _ZN3bpp10MultiRangeImE6clean_Ev@Base 2.4.1
    + _ZN3bpp10MultiRangeImE8addRangeERKNS_5RangeImEE@Base 2.4.1
    + _ZN3bpp10MultiRangeImED0Ev@Base 2.4.1
    + _ZN3bpp10MultiRangeImED1Ev@Base 2.4.1
    + _ZN3bpp10MultiRangeImED2Ev@Base 2.4.1
    + _ZN3bpp10NexusTools14getNextCommandERSiRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_b@Base 2.4.1
    + _ZN3bpp10NexusTools21getNextNonCommentLineB5cxx11ERSi@Base 2.4.1
    + _ZN3bpp11AAMassIndexD0Ev@Base 2.4.1
    + _ZN3bpp11AAMassIndexD1Ev@Base 2.4.1
    + _ZN3