Source: q2-feature-classifier
Version: 2023.7.0-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas@debian.org
Usertags: ftbfs-20240115 ftbfs-trixie

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):

make[1]: Entering directory '/<<PKGBUILDDIR>>'
PYTHONPATH=/<<PKGBUILDDIR>> \
dh_auto_test -- -s custom --test-args="cd {build_dir}; py.test-3 --cov=q2_feature_classifier"
I: pybuild pybuild:310: python3.11 setup.py develop --install-dir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build
running develop /usr/lib/python3/dist-packages/setuptools/command/develop.py:40: EasyInstallDeprecationWarning: easy_install command is deprecated.
!!

********************************************************************************
Please avoid running ``setup.py`` and ``easy_install``.
Instead, use pypa/build, pypa/installer or other
standards-based tools.

See https://github.com/pypa/setuptools/issues/917 for details.
********************************************************************************

!!
easy_install.initialize_options(self) /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.

See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************

!!
self.initialize_options()
running egg_info
creating q2_feature_classifier.egg-info
writing q2_feature_classifier.egg-info/PKG-INFO
writing dependency_links to q2_feature_classifier.egg-info/dependency_links.txt
writing entry points to q2_feature_classifier.egg-info/entry_points.txt writing top-level names to q2_feature_classifier.egg-info/top_level.txt writing manifest file 'q2_feature_classifier.egg-info/SOURCES.txt'
reading manifest file 'q2_feature_classifier.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'q2_feature_classifier.egg-info/SOURCES.txt'
running build_ext
Creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2-feature-classifier.egg-link (link to .)
Adding q2-feature-classifier 2023.7.0 to easy-install.pth file

Installed /<<PKGBUILDDIR>>
Processing dependencies for q2-feature-classifier==2023.7.0
Finished processing dependencies for q2-feature-classifier==2023.7.0
I: pybuild base:305: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; py.test-3 --cov=q2_feature_classifier
============================= test session starts ==============================
platform linux -- Python 3.11.7, pytest-7.4.4, pluggy-1.3.0
rootdir: /<<PKGBUILDDIR>>
plugins: cov-4.1.0
collected 0 items / 5 errors

==================================== ERRORS ====================================
_ ERROR collecting .pybuild/cpython3_3.11/build/q2_feature_classifier/tests/test_classifier.py _
/usr/lib/python3.11/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1126: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1126: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1147: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:690: in _load_unlocked
???
<frozen importlib._bootstrap_external>:940: in exec_module
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
q2_feature_classifier/__init__.py:15: in <module>
importlib.import_module('q2_feature_classifier.classifier') /usr/lib/python3.11/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1147: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:690: in _load_unlocked
???
<frozen importlib._bootstrap_external>:940: in exec_module
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
q2_feature_classifier/classifier.py:17: in <module>
from qiime2.plugin import Int, Str, Float, Bool, Choices, Range /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module>
__citations__ = tuple(Citations.load('citations.bib', package='qiime2')) /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load
parser = bp.bparser.BibTexParser()
E AttributeError: module 'bibtexparser' has no attribute 'bparser'
_ ERROR collecting .pybuild/cpython3_3.11/build/q2_feature_classifier/tests/test_consensus_assignment.py _
/usr/lib/python3.11/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1126: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1126: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1147: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:690: in _load_unlocked
???
<frozen importlib._bootstrap_external>:940: in exec_module
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
q2_feature_classifier/__init__.py:15: in <module>
importlib.import_module('q2_feature_classifier.classifier') /usr/lib/python3.11/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1147: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:690: in _load_unlocked
???
<frozen importlib._bootstrap_external>:940: in exec_module
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
q2_feature_classifier/classifier.py:18: in <module>
from q2_types.feature_data import ( /usr/lib/python3/dist-packages/q2_types/__init__.py:18: in <module>
importlib.import_module('q2_types.multiplexed_sequences') /usr/lib/python3.11/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level) /usr/lib/python3/dist-packages/q2_types/multiplexed_sequences/__init__.py:11: in <module>
from ._format import (MultiplexedSingleEndBarcodeInSequenceDirFmt, /usr/lib/python3/dist-packages/q2_types/multiplexed_sequences/_format.py:9: in <module>
import qiime2.plugin.model as model /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module>
__citations__ = tuple(Citations.load('citations.bib', package='qiime2')) /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load
parser = bp.bparser.BibTexParser()
E AttributeError: module 'bibtexparser' has no attribute 'bparser'
_ ERROR collecting .pybuild/cpython3_3.11/build/q2_feature_classifier/tests/test_custom.py _
/usr/lib/python3.11/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1126: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1126: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1147: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:690: in _load_unlocked
???
<frozen importlib._bootstrap_external>:940: in exec_module
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
q2_feature_classifier/__init__.py:15: in <module>
importlib.import_module('q2_feature_classifier.classifier') /usr/lib/python3.11/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1147: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:690: in _load_unlocked
???
<frozen importlib._bootstrap_external>:940: in exec_module
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
q2_feature_classifier/classifier.py:18: in <module>
from q2_types.feature_data import ( /usr/lib/python3/dist-packages/q2_types/__init__.py:18: in <module>
importlib.import_module('q2_types.multiplexed_sequences') /usr/lib/python3.11/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level) /usr/lib/python3/dist-packages/q2_types/multiplexed_sequences/__init__.py:11: in <module>
from ._format import (MultiplexedSingleEndBarcodeInSequenceDirFmt, /usr/lib/python3/dist-packages/q2_types/multiplexed_sequences/_format.py:9: in <module>
import qiime2.plugin.model as model /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module>
__citations__ = tuple(Citations.load('citations.bib', package='qiime2')) /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load
parser = bp.bparser.BibTexParser()
E AttributeError: module 'bibtexparser' has no attribute 'bparser'
_ ERROR collecting .pybuild/cpython3_3.11/build/q2_feature_classifier/tests/test_cutter.py _
/usr/lib/python3.11/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1126: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1126: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1147: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:690: in _load_unlocked
???
<frozen importlib._bootstrap_external>:940: in exec_module
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
q2_feature_classifier/__init__.py:15: in <module>
importlib.import_module('q2_feature_classifier.classifier') /usr/lib/python3.11/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1147: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:690: in _load_unlocked
???
<frozen importlib._bootstrap_external>:940: in exec_module
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
q2_feature_classifier/classifier.py:18: in <module>
from q2_types.feature_data import ( /usr/lib/python3/dist-packages/q2_types/__init__.py:18: in <module>
importlib.import_module('q2_types.multiplexed_sequences') /usr/lib/python3.11/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level) /usr/lib/python3/dist-packages/q2_types/multiplexed_sequences/__init__.py:11: in <module>
from ._format import (MultiplexedSingleEndBarcodeInSequenceDirFmt, /usr/lib/python3/dist-packages/q2_types/multiplexed_sequences/_format.py:9: in <module>
import qiime2.plugin.model as model /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module>
__citations__ = tuple(Citations.load('citations.bib', package='qiime2')) /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load
parser = bp.bparser.BibTexParser()
E AttributeError: module 'bibtexparser' has no attribute 'bparser'
_ ERROR collecting .pybuild/cpython3_3.11/build/q2_feature_classifier/tests/test_taxonomic_classifier.py _
/usr/lib/python3.11/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1126: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1126: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1147: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:690: in _load_unlocked
???
<frozen importlib._bootstrap_external>:940: in exec_module
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
q2_feature_classifier/__init__.py:15: in <module>
importlib.import_module('q2_feature_classifier.classifier') /usr/lib/python3.11/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1204: in _gcd_import
???
<frozen importlib._bootstrap>:1176: in _find_and_load
???
<frozen importlib._bootstrap>:1147: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:690: in _load_unlocked
???
<frozen importlib._bootstrap_external>:940: in exec_module
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
q2_feature_classifier/classifier.py:18: in <module>
from q2_types.feature_data import ( /usr/lib/python3/dist-packages/q2_types/__init__.py:18: in <module>
importlib.import_module('q2_types.multiplexed_sequences') /usr/lib/python3.11/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level) /usr/lib/python3/dist-packages/q2_types/multiplexed_sequences/__init__.py:11: in <module>
from ._format import (MultiplexedSingleEndBarcodeInSequenceDirFmt, /usr/lib/python3/dist-packages/q2_types/multiplexed_sequences/_format.py:9: in <module>
import qiime2.plugin.model as model /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module>
__citations__ = tuple(Citations.load('citations.bib', package='qiime2')) /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load
parser = bp.bparser.BibTexParser()
E AttributeError: module 'bibtexparser' has no attribute 'bparser' =============================== warnings summary ===============================
../../../../../../usr/lib/python3/dist-packages/qiime2/core/cite.py:10
/usr/lib/python3/dist-packages/qiime2/core/cite.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import pkg_resources

../../../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871
/usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('flufl')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)

../../../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871
/usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html

---------- coverage: platform linux, python 3.11.7-final-0 -----------
Name Stmts Miss Cover
------------------------------------------------------------------------------
q2_feature_classifier/__init__.py 8 3 62%
q2_feature_classifier/_blast.py 54 54 0%
q2_feature_classifier/_consensus_assignment.py 43 43 0%
q2_feature_classifier/_cutter.py 100 100 0%
q2_feature_classifier/_skl.py 58 58 0%
q2_feature_classifier/_taxonomic_classifier.py 71 71 0%
q2_feature_classifier/_version.py 4 0 100%
q2_feature_classifier/_vsearch.py 91 91 0%
q2_feature_classifier/classifier.py 199 190 5%
q2_feature_classifier/custom.py 64 64 0%
q2_feature_classifier/plugin_setup.py 4 4 0%
q2_feature_classifier/tests/__init__.py 19 19 0%
q2_feature_classifier/tests/test_classifier.py 147 147 0%
q2_feature_classifier/tests/test_consensus_assignment.py 178 178 0%
q2_feature_classifier/tests/test_custom.py 40 40 0%
q2_feature_classifier/tests/test_cutter.py 67 67 0%
q2_feature_classifier/tests/test_taxonomic_classifier.py 77 77 0%
------------------------------------------------------------------------------
TOTAL 1224 1206 1%

=========================== short test summary info ============================
ERROR q2_feature_classifier/tests/test_classifier.py - AttributeError: module...
ERROR q2_feature_classifier/tests/test_consensus_assignment.py - AttributeErr...
ERROR q2_feature_classifier/tests/test_custom.py - AttributeError: module 'bi...
ERROR q2_feature_classifier/tests/test_cutter.py - AttributeError: module 'bi...
ERROR q2_feature_classifier/tests/test_taxonomic_classifier.py - AttributeErr...
!!!!!!!!!!!!!!!!!!! Interrupted: 5 errors during collection !!!!!!!!!!!!!!!!!!!!
======================== 3 warnings, 5 errors in 1.38s =========================
E: pybuild pybuild:391: test: plugin custom failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; py.test-3 --cov=q2_feature_classifier
dh_auto_test: error: pybuild --test -i python{version} -p 3.11 -s custom "--test-args=cd {build_dir}; py.test-3 --cov=q2_feature_classifier" returned exit code 13

The full build log is available from: http://qa-logs.debian.net/2024/01/15/q2-feature-classifier_2023.7.0-1_unstable.log

All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240115;users=lucas@debian.org
or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240115&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.

--- SoupGate-Win32 v1.05
* Origin: fsxNet Usenet Gateway (21:1/5)

Control: reassign -1 src:qiime 2022.11.1-2
Control: affects -1 + q2-feature-classifier
Control: merge -1 1060987

This is another manifestation of #1060987, this time affecting q2-feature-classifier:

/usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load
parser = bp.bparser.BibTexParser()
E AttributeError: module 'bibtexparser' has no attribute 'bparser'

Have a nice day, :)
--
.''`. Étienne Mollier <emollier@debian.org>
: :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da
`. `' sent from /dev/pts/2, please excuse my verbosity
`-

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Processing control commands:

reassign -1 src:qiime 2022.11.1-2

Bug #1060965 [src:q2-feature-classifier] q2-feature-classifier: FTBFS: dh_auto_test: error: pybuild --test -i python{version} -p 3.11 -s custom "--test-args=cd {build_dir}; py.test-3 --cov=q2_feature_classifier" returned exit code 13
Bug reassigned from package 'src:q2-feature-classifier' to 'src:qiime'.
No longer marked as found in versions q2-feature-classifier/2023.7.0-1. Ignoring request to alter fixed versions of bug #1060965 to the same values previously set
Bug #1060965 [src:qiime] q2-feature-classifier: FTBFS: dh_auto_test: error: pybuild --test -i python{version} -p 3.11 -s custom "--test-args=cd {build_dir}; py.test-3 --cov=q2_feature_classifier" returned exit code 13
Marked as found in versions qiime/2022.11.1-2.

affects -1 + q2-feature-classifier

Bug #1060965 [src:qiime] q2-feature-classifier: FTBFS: dh_auto_test: error: pybuild --test -i python{version} -p 3.11 -s custom "--test-args=cd {build_dir}; py.test-3 --cov=q2_feature_classifier" returned exit code 13
Added indication that 1060965 affects q2-feature-classifier

merge -1 1060987

Bug #1060965 [src:qiime] q2-feature-classifier: FTBFS: dh_auto_test: error: pybuild --test -i python{version} -p 3.11 -s custom "--test-args=cd {build_dir}; py.test-3 --cov=q2_feature_classifier" returned exit code 13
Unable to merge bugs because:
affects of #1060987 is 'q2cli' not 'q2-feature-classifier'
Failed to merge 1060965: Did not alter merged bugs.


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1060965: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1060965
1060987: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1060987
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems

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Processing control commands:

tags -1 upstream

Bug #1060965 [src:qiime] q2cli: AttributeError: module 'bibtexparser' has no attribute 'bparser'
Bug #1060987 [src:qiime] q2cli: AttributeError: module 'bibtexparser' has no attribute 'bparser'
Added tag(s) upstream.
Added tag(s) upstream.

forwarded -1 https://github.com/sciunto-org/python-bibtexparser/issues/451

Bug #1060965 [src:qiime] q2cli: AttributeError: module 'bibtexparser' has no attribute 'bparser'
Bug #1060987 [src:qiime] q2cli: AttributeError: module 'bibtexparser' has no attribute 'bparser'
Set Bug forwarded-to-address to 'https://github.com/sciunto-org/python-bibtexparser/issues/451'.
Set Bug forwarded-to-address to 'https://github.com/sciunto-org/python-bibtexparser/issues/451'.

--
1060965: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1060965
1060987: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1060987
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems

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Control: tags -1 upstream
Control: forwarded -1 https://github.com/sciunto-org/python-bibtexparser/issues/451

It turns out that bibtexparser has changed its API. I asked for some documentation about this change to find a proper patch.

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--- SoupGate-Win32 v1.05
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Processing control commands:

tags -1 - upstream

Bug #1060965 [src:qiime] q2cli: AttributeError: module 'bibtexparser' has no attribute 'bparser'
Bug #1060987 [src:qiime] q2cli: AttributeError: module 'bibtexparser' has no attribute 'bparser'
Removed tag(s) upstream.
Removed tag(s) upstream.

tags -1 pending

Bug #1060965 [src:qiime] q2cli: AttributeError: module 'bibtexparser' has no attribute 'bparser'
Bug #1060987 [src:qiime] q2cli: AttributeError: module 'bibtexparser' has no attribute 'bparser'
Added tag(s) pending.
Added tag(s) pending.

--
1060965: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1060965
1060987: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1060987
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems

--- SoupGate-Win32 v1.05
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Control: tags -1 - upstream
Control: tags -1 pending

The issue was resolved by downgrading bibtexparser to the latest stable upstream release (the formerly uploaded beta caused the problem).

Unfortunately there is a new issue in the new version of q2cli which
fails to build due to test suite errors, which can be seen in Salsa CI

https://salsa.debian.org/med-team/q2cli/-/jobs/5223461

Kind regards
Andreas.

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