Source: q2cli
Version: 2022.11.1-2
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas@debian.org
Usertags: ftbfs-20240115 ftbfs-trixie

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):

debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:305: python3.11 setup.py config
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:305: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli
copying q2cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli
copying q2cli/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli
copying q2cli/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli
copying q2cli/commands.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli
copying q2cli/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests
copying q2cli/tests/test_mystery_stew.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests
copying q2cli/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests
copying q2cli/tests/test_cache_cli.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests
copying q2cli/tests/test_dev.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests
copying q2cli/tests/test_cli.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests
copying q2cli/tests/test_core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests
copying q2cli/tests/test_usage.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests
copying q2cli/tests/test_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/core
copying q2cli/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/core
copying q2cli/core/completion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/core
copying q2cli/core/state.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/core
copying q2cli/core/usage.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/core
copying q2cli/core/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/core
copying q2cli/core/cache.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/builtin
copying q2cli/builtin/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/builtin
copying q2cli/builtin/tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/builtin
copying q2cli/builtin/dev.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/builtin
copying q2cli/builtin/info.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/builtin
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/click
copying q2cli/click/type.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/click
copying q2cli/click/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/click
copying q2cli/click/parser.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/click
copying q2cli/click/command.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/click
copying q2cli/click/option.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/click
running egg_info
creating q2cli.egg-info
writing q2cli.egg-info/PKG-INFO
writing dependency_links to q2cli.egg-info/dependency_links.txt
writing entry points to q2cli.egg-info/entry_points.txt
writing top-level names to q2cli.egg-info/top_level.txt
writing manifest file 'q2cli.egg-info/SOURCES.txt'
reading manifest file 'q2cli.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'q2cli.egg-info/SOURCES.txt'
UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/_version.py
set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/_version.py to '2022.11.1'
running build_scripts
creating build
creating build/scripts-3.11
copying bin/tab-qiime -> build/scripts-3.11
changing mode of build/scripts-3.11/tab-qiime from 644 to 755
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:305: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; python3.11 -m pytest --ignore=q2cli/tests/test_usage.py
============================= test session starts ==============================
platform linux -- Python 3.11.7, pytest-7.4.4, pluggy-1.3.0
rootdir: /<<PKGBUILDDIR>>
collected 0 items / 6 errors

==================================== ERRORS ====================================
_ ERROR collecting .pybuild/cpython3_3.11/build/q2cli/tests/test_cache_cli.py __
q2cli/tests/test_cache_cli.py:15: in <module>
from qiime2 import Artifact /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module>
__citations__ = tuple(Citations.load('citations.bib', package='qiime2')) /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load
parser = bp.bparser.BibTexParser()
E AttributeError: module 'bibtexparser' has no attribute 'bparser'
____ ERROR collecting .pybuild/cpython3_3.11/build/q2cli/tests/test_cli.py _____
q2cli/tests/test_cli.py:18: in <module>
from qiime2 import Artifact, Visualization /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module>
__citations__ = tuple(Citations.load('citations.bib', package='qiime2')) /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load
parser = bp.bparser.BibTexParser()
E AttributeError: module 'bibtexparser' has no attribute 'bparser'
____ ERROR collecting .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py ____
q2cli/tests/test_core.py:16: in <module>
from qiime2 import Artifact /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module>
__citations__ = tuple(Citations.load('citations.bib', package='qiime2')) /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load
parser = bp.bparser.BibTexParser()
E AttributeError: module 'bibtexparser' has no attribute 'bparser'
____ ERROR collecting .pybuild/cpython3_3.11/build/q2cli/tests/test_dev.py _____
q2cli/tests/test_dev.py:16: in <module>
from qiime2 import Artifact /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module>
__citations__ = tuple(Citations.load('citations.bib', package='qiime2')) /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load
parser = bp.bparser.BibTexParser()
E AttributeError: module 'bibtexparser' has no attribute 'bparser'
_ ERROR collecting .pybuild/cpython3_3.11/build/q2cli/tests/test_mystery_stew.py _
q2cli/tests/test_mystery_stew.py:13: in <module>
from q2cli.core.usage import CLIUsage
q2cli/core/usage.py:14: in <module>
import qiime2.sdk.usage as usage /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:43: in <module>
import qiime2
/usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module>
__citations__ = tuple(Citations.load('citations.bib', package='qiime2')) /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load
parser = bp.bparser.BibTexParser()
E AttributeError: module 'bibtexparser' has no attribute 'bparser'
___ ERROR collecting .pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py ____
q2cli/tests/test_tools.py:16: in <module>
from qiime2 import Artifact /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module>
__citations__ = tuple(Citations.load('citations.bib', package='qiime2')) /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load
parser = bp.bparser.BibTexParser()
E AttributeError: module 'bibtexparser' has no attribute 'bparser' =============================== warnings summary ===============================
../../../../../../usr/lib/python3/dist-packages/qiime2/core/cite.py:10
/usr/lib/python3/dist-packages/qiime2/core/cite.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import pkg_resources

../../../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871
/usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('flufl')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================
ERROR q2cli/tests/test_cache_cli.py - AttributeError: module 'bibtexparser' h...
ERROR q2cli/tests/test_cli.py - AttributeError: module 'bibtexparser' has no ...
ERROR q2cli/tests/test_core.py - AttributeError: module 'bibtexparser' has no...
ERROR q2cli/tests/test_dev.py - AttributeError: module 'bibtexparser' has no ...
ERROR q2cli/tests/test_mystery_stew.py - AttributeError: module 'bibtexparser...
ERROR q2cli/tests/test_tools.py - AttributeError: module 'bibtexparser' has n...
!!!!!!!!!!!!!!!!!!! Interrupted: 6 errors during collection !!!!!!!!!!!!!!!!!!!!
======================== 2 warnings, 6 errors in 1.06s =========================
E: pybuild pybuild:391: test: plugin distutils failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; python3.11 -m pytest --ignore=q2cli/tests/test_usage.py
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

The full build log is available from: http://qa-logs.debian.net/2024/01/15/q2cli_2022.11.1-2_unstable.log

All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240115;users=lucas@debian.org
or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240115&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.

--- SoupGate-Win32 v1.05
* Origin: fsxNet Usenet Gateway (21:1/5)

Processing control commands:

reassign -1 src:qiime/2022.11.1-2

Unknown command or malformed arguments to command.

retitle -1 qiime: FTBFS: AttributeError: module 'bibtexparser' has no attribute 'bparser'

Bug #1060987 [src:q2cli] q2cli: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13
Changed Bug title to 'qiime: FTBFS: AttributeError: module 'bibtexparser' has no attribute 'bparser'' from 'q2cli: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13'.

affects -1 + q2cli

Bug #1060987 [src:q2cli] qiime: FTBFS: AttributeError: module 'bibtexparser' has no attribute 'bparser'
Added indication that 1060987 affects q2cli

--
1060987: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1060987
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems

--- SoupGate-Win32 v1.05
* Origin: fsxNet Usenet Gateway (21:1/5)

This is a multi-part message in MIME format...

Your message dated Tue, 6 Feb 2024 08:32:55 +0100
with message-id <ZcHgpqgOxOPNmv8a@an3as.eu>
and subject line qiime version 2023.9.2-1 does not show this problem any more has caused the Debian Bug report #1060965,
regarding q2cli: AttributeError: module 'bibtexparser' has no attribute 'bparser'
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


--
1060965: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1060965
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems

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