On 12/23/21 1:54 PM, Andreas Tille wrote:

Hi again,

by chance I learned that I do not have permissions to create
repositories in salsa:python-team/packages thus moving packages would be
not as simple as transfering the projects. Please grant me maintainer permissions to enable moving packages smoothly.

AFAICS here[1] you do have maintainer permissions.

[1]: https://salsa.debian.org/groups/python-team/packages/-/group_members?search=tille

Regards,
Nilesh

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Hi,

Am Thu, Dec 23, 2021 at 02:07:45PM +0530 schrieb Nilesh Patra:

On 12/23/21 1:54 PM, Andreas Tille wrote:

Hi again,

by chance I learned that I do not have permissions to create
repositories in salsa:python-team/packages thus moving packages would be not as simple as transfering the projects. Please grant me maintainer permissions to enable moving packages smoothly.

AFAICS here[1] you do have maintainer permissions.

Hmmm, that's correct and I confirm I can create repositories manually
(just my script failed and I did not checked on salsa.)

Thus I moved mypy now and moved it to DPT[2]. Feel free to add yourself
to Uploaders and upload with the new location.

Sandro, do you have any other packages in mind?

Hope this helps

Andreas.


[2] https://salsa.debian.org/python-team/packages/mypy/-/commit/8bca8da1ca92302b921755318d3325d53b6e0a47

--
http://fam-tille.de

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Thus I moved mypy now and moved it to DPT[2]. Feel free to add yourself
to Uploaders and upload with the new location.

thanks!

Sandro, do you have any other packages in mind?

too many to scan by-eyes only, so i planned on running some queries on
UDD to figure some other package out, but the udd-mirror is down, so
i'm going to provide a list (if any) later on.

Thanks,
--
Sandro "morph" Tosi
My website: http://sandrotosi.me/
Me at Debian: http://wiki.debian.org/SandroTosi
Twitter: https://twitter.com/sandrotosi

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Hi Sandro,

Am Thu, Dec 23, 2021 at 09:52:49AM -0500 schrieb Sandro Tosi:

Thus I moved mypy now and moved it to DPT[2]. Feel free to add yourself
to Uploaders and upload with the new location.

thanks!

You are welcome.

Sandro, do you have any other packages in mind?

too many to scan by-eyes only, so i planned on running some queries on
UDD to figure some other package out, but the udd-mirror is down, so
i'm going to provide a list (if any) later on.

In general we are open to hand over general packages that are not
directly touching the medical / biological field to competent hands. So
just ping me and I'll try to respond as quick as possible. Please also
note: I'd be really happy if for any of the DPT packages featuring my
ID as Uploader if somebody wants to add another ID and become an
Uploader of that package. I have way more packages on my table than
I really want to have.

Kind regards

Andreas.

--
http://fam-tille.de

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Sandro, do you have any other packages in mind?

too many to scan by-eyes only, so i planned on running some queries on
UDD to figure some other package out, but the udd-mirror is down, so
i'm going to provide a list (if any) later on.

In general we are open to hand over general packages that are not
directly touching the medical / biological field to competent hands. So
just ping me and I'll try to respond as quick as possible.

with UDD-mirror U&R now, i was able to generate the below list. This
is in no way a request to move them, just a potential source of data
for your consideration

arcp 0.2.1-3
python3-arcp : (Archive and Package) URI parser and generator
enlighten 1.7.2-1
python3-enlighten : console progress bar module for Python3
python3-enlighten-doc : console progress bar module for Python3 (documentation)
python3-enlighten-examples : console progress bar module for
Python3 (examples)
h5sparse 0.1.0-4
python3-h5sparse : Scipy sparse matrix in HDF5
indexed-gzip 1.6.4-1
python3-indexed-gzip : fast random access of gzip files in Python
pyrle 0.0.33-2
python3-pyrle : run length arithmetic in Python
python-anndata 0.7.8-2
python3-anndata : annotated gene by sample numpy matrix
python-avro 1.10.2+dfsg-1
python3-avro : Apache Avro serialization system (Python 3 library) python-ciso8601 2.2.0-1
python3-ciso8601 : fast ISO8601 date time parser for Python written in C python-colormap 1.0.4-2
python3-colormap : ease manipulation of matplotlib colormaps and
color codecs (Python 3)
python-colormath 3.0.0-1.1
python3-colormath : Abstracts common color math operations (Python
3 version)
python-cooler 0.8.11-1
python3-cooler : library for a sparse, compressed, binary persistent storage
python3-cooler-examples : library for a sparse, compressed, binary persistent storage (examples)
python-depinfo 1.7.0-1
python3-depinfo : retrieve and print Python 3 package dependencies python-duckpy 3.2.0-2
python3-duckpy : simple Python library for searching on DuckDuckGo python-easydev 0.12.0+dfsg-1
python3-easydev : common utilities to ease the development of
Python packages (Python 3)
python-etelemetry 0.2.0-4
python3-etelemetry : lightweight Python3 client to communicate
with the etelemetry server
python-fitbit 0.3.1-2
python-fitbit-doc : FitBit REST API Client Implementation - Documentation
python3-fitbit : FitBit REST API Client Implementation - Python 3 python-hdmedians 0.14.2-3
python3-hdmedians : high-dimensional medians in Python3
python-leidenalg 0.8.8-1
python3-leidenalg : Python3 implementation of the Leiden algorithm in C++ python-lzstring 1.0.4-1.1
python3-lzstring : LZ-based compression algorithm for Python
(Python 3 version)
python-matplotlib-venn 0.11.6-2
python3-matplotlib-venn : Python 3 plotting area-proportional two-
and three-way Venn diagrams
python-multipletau 0.3.3+ds-3
python-multipletau-doc : documentation for multipletau Python module
python3-multipletau : multiple-tau algorithm for Python3/NumPy python-multisplitby 0.0.1-4
python3-multisplitby : Python3 module to create iterables split on arbitrary separators
python-ncls 0.0.63+ds-1
python3-ncls : datastructure for interval overlap queries
python-pipdeptree 2.2.0-2
python3-pipdeptree : display dependency tree of the installed
Python 3 packages
python-pyflow 1.1.20-3
python3-pyflow : lightweight parallel task engine for Python python-pynndescent 0.5.2+dfsg-1
python3-pynndescent : nearest neighbor descent for approximate
nearest neighbors
python-pypubsub 4.0.3-5
python3-pubsub : Python 3 publish-subcribe library
python-sinfo 0.3.1-2
python3-sinfo : print different version information for loaded modules python-spectra 0.0.11-3
python3-spectra : Easy color scales and color conversion for
Python (Python 3 version)
python-stdlib-list 0.8.0-4
python3-stdlib-list : List of Python Standard Libraries (2.6-7, 3.2-9) python-streamz 0.6.3-1
python3-streamz : build pipelines to manage continuous streams of data python-stubserver 1.1-2
python3-stubserver : mock tester of external web dependencies for Python python-tinyalign 0.2-5
python3-tinyalign : numerical representation of differences between strings python-typechecks 0.1.0+ds-2
python3-typechecks : express constraints on types
python-upsetplot 0.6.0-2
python3-upsetplot : Draw Lex et al.'s UpSet plots with Pandas and Matplotlib
python-wdlparse 0.1.0-2
python3-wdlparse : Workflow Description Language (WDL) parser for Python python-wordcloud 1.8.1+dfsg-2
python3-wordcloud : little word cloud generator in Python
python-xopen 1.2.1-3
python3-xopen : Python3 module to open compressed files transparently smart-open 5.2.1-3
python3-smart-open : utils for streaming large files
sorted-nearest 0.0.31+dfsg-1
python3-sorted-nearest : Cython helper library for pyranges sphinxcontrib-autoprogram 0.1.7-1
python3-sphinxcontrib.autoprogram : automated documentation of CLI
programs for Sphinx (Python 3)

Thanks,
--
Sandro "morph" Tosi
My website: http://sandrotosi.me/
Me at Debian: http://wiki.debian.org/SandroTosi
Twitter: https://twitter.com/sandrotosi

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To: tille@debian.org (Andreas Tille)
Copy: debian-python@lists.debian.org (debian-python)
Copy: onovy@debian.org (=?UTF-8?B?T25kxZllaiBOb3bDvQ==?=)
Copy: michael.crusoe@gmail.com (Michael R. Crusoe)

This is an OpenPGP/MIME signed message (RFC 4880 and 3156) --L3BgX0AvNt8WGXLdSzVhh1uGevWDGKNpz
Content-Type: text/plain; charset=utf-8; format=flowed
Content-Language: en-US
Content-Transfer-Encoding: quoted-printable

Before you/someone else makes a move, some of these packages are bioinformatics and are better suited for med team:

* indexed-gzip - This one is mainly for NIFTI image files
* python-anndata - For gene annotation
* python-fitbit - For FITBIT API (more in med domain)
* python-cooler - For genomic interaction data

There are probably more, but please do not move these ^^

Nilesh


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Am Sun, Jan 02, 2022 at 01:04:46PM +0530 schrieb Nilesh Patra:

Before you/someone else makes a move, some of these packages are bioinformatics
and are better suited for med team:

* indexed-gzip - This one is mainly for NIFTI image files

I fully agree here but I'd be happy to habd this over (and just did so)
since I feel the competence for NIFTI quite sparsely settled in our team
and thus I consider it well hosted in Debian Python Team.

* python-anndata - For gene annotation

ACK (and wrote this also in my mail.

* python-fitbit - For FITBIT API (more in med domain)
* python-cooler - For genomic interaction data

There are probably more, but please do not move these ^^

I will not move these.

Kind regards

Andreas.

--
http://fam-tille.de

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Am Sun, Jan 02, 2022 at 10:00:09AM +0100 schrieb Andreas Tille:

...

Continuing with moving packages from Debian Med to Debian Python Team

python-ciso8601 2.2.0-1
python3-ciso8601 : fast ISO8601 date time parser for Python written in C

Moved to Debian Python Team

python-colormap 1.0.4-2
python3-colormap : ease manipulation of matplotlib colormaps and
color codecs (Python 3)

Moved to Debian Python Team

python-colormath 3.0.0-1.1
python3-colormath : Abstracts common color math operations (Python
3 version)

Moved to Debian Python Team

python-cooler 0.8.11-1
python3-cooler : library for a sparse, compressed, binary persistent storage
python3-cooler-examples : library for a sparse, compressed, binary persistent storage (examples)

Should remain in Debian Med team (see
https://lists.debian.org/debian-python/2022/01/msg00002.html )

python-depinfo 1.7.0-1
python3-depinfo : retrieve and print Python 3 package dependencies

Moved to Debian Python Team

python-fitbit 0.3.1-2
python-fitbit-doc : FitBit REST API Client Implementation - Documentation
python3-fitbit : FitBit REST API Client Implementation - Python 3

Should remain in Debian Med team (see https://lists.debian.org/debian-python/2022/01/msg00002.html )

Will be continued later.

Kind regards

Andreas.

python-duckpy 3.2.0-2
python3-duckpy : simple Python library for searching on DuckDuckGo python-easydev 0.12.0+dfsg-1
python3-easydev : common utilities to ease the development of
Python packages (Python 3)
python-etelemetry 0.2.0-4
python3-etelemetry : lightweight Python3 client to communicate
with the etelemetry server
python-hdmedians 0.14.2-3
python3-hdmedians : high-dimensional medians in Python3 python-leidenalg 0.8.8-1
python3-leidenalg : Python3 implementation of the Leiden algorithm in C++
python-lzstring 1.0.4-1.1
python3-lzstring : LZ-based compression algorithm for Python
(Python 3 version)
python-matplotlib-venn 0.11.6-2
python3-matplotlib-venn : Python 3 plotting area-proportional two-
and three-way Venn diagrams
python-multipletau 0.3.3+ds-3
python-multipletau-doc : documentation for multipletau Python module
python3-multipletau : multiple-tau algorithm for Python3/NumPy python-multisplitby 0.0.1-4
python3-multisplitby : Python3 module to create iterables split on arbitrary separators
python-ncls 0.0.63+ds-1
python3-ncls : datastructure for interval overlap queries python-pipdeptree 2.2.0-2
python3-pipdeptree : display dependency tree of the installed
Python 3 packages
python-pyflow 1.1.20-3
python3-pyflow : lightweight parallel task engine for Python python-pynndescent 0.5.2+dfsg-1
python3-pynndescent : nearest neighbor descent for approximate
nearest neighbors
python-pypubsub 4.0.3-5
python3-pubsub : Python 3 publish-subcribe library
python-sinfo 0.3.1-2
python3-sinfo : print different version information for loaded modules python-spectra 0.0.11-3
python3-spectra : Easy color scales and color conversion for
Python (Python 3 version)
python-stdlib-list 0.8.0-4
python3-stdlib-list : List of Python Standard Libraries (2.6-7, 3.2-9) python-streamz 0.6.3-1
python3-streamz : build pipelines to manage continuous streams of data python-stubserver 1.1-2
python3-stubserver : mock tester of external web dependencies for Python
python-tinyalign 0.2-5
python3-tinyalign : numerical representation of differences between strings
python-typechecks 0.1.0+ds-2
python3-typechecks : express constraints on types
python-upsetplot 0.6.0-2
python3-upsetplot : Draw Lex et al.'s UpSet plots with Pandas and Matplotlib
python-wdlparse 0.1.0-2
python3-wdlparse : Workflow Description Language (WDL) parser for Python
python-wordcloud 1.8.1+dfsg-2
python3-wordcloud : little word cloud generator in Python
python-xopen 1.2.1-3
python3-xopen : Python3 module to open compressed files transparently smart-open 5.2.1-3
python3-smart-open : utils for streaming large files
sorted-nearest 0.0.31+dfsg-1
python3-sorted-nearest : Cython helper library for pyranges sphinxcontrib-autoprogram 0.1.7-1
python3-sphinxcontrib.autoprogram : automated documentation of CLI programs for Sphinx (Python 3)

Thanks,
--
Sandro "morph" Tosi
My website: http://sandrotosi.me/
Me at Debian: http://wiki.debian.org/SandroTosi
Twitter: https://twitter.com/sandrotosi

--
http://fam-tille.de

--
http://fam-tille.de

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Am Sun, Jan 02, 2022 at 11:25:40AM +0100 schrieb Andreas Tille:

Am Sun, Jan 02, 2022 at 10:00:09AM +0100 schrieb Andreas Tille:

...

Continuing with moving packages from Debian Med to Debian Python Team

python-duckpy 3.2.0-2
python3-duckpy : simple Python library for searching on DuckDuckGo

Moved to Debian Python Team

python-easydev 0.12.0+dfsg-1
python3-easydev : common utilities to ease the development of
Python packages (Python 3)

Moved to Debian Python Team

python-etelemetry 0.2.0-4
python3-etelemetry : lightweight Python3 client to communicate
with the etelemetry server

That's pretty clearly a Debian Med topic

python-hdmedians 0.14.2-3
python3-hdmedians : high-dimensional medians in Python3

Moved to Debian Python Team

python-leidenalg 0.8.8-1
python3-leidenalg : Python3 implementation of the Leiden algorithm in C++

Seems pretty related to Debian Med topic even if not that obvious.

python-lzstring 1.0.4-1.1
python3-lzstring : LZ-based compression algorithm for Python
(Python 3 version)

Moved to Debian Python Team

python-matplotlib-venn 0.11.6-2
python3-matplotlib-venn : Python 3 plotting area-proportional two-
and three-way Venn diagrams

Moved to Debian Python Team

python-multipletau 0.3.3+ds-3
python-multipletau-doc : documentation for multipletau Python module
python3-multipletau : multiple-tau algorithm for Python3/NumPy

Moved to Debian Python Team

python-multisplitby 0.0.1-4
python3-multisplitby : Python3 module to create iterables split on arbitrary separators

Moved to Debian Python Team

python-ncls 0.0.63+ds-1
python3-ncls : datastructure for interval overlap queries

Moved to Debian Python Team

python-pipdeptree 2.2.0-2
python3-pipdeptree : display dependency tree of the installed
Python 3 packages

Moved to Debian Python Team

python-pyflow 1.1.20-3
python3-pyflow : lightweight parallel task engine for Python

Workflows are a very hot topic in Debian Med team. If there is no strong reason to move this package to Debian Python team I'd prefer to leave it
where it is.

python-pynndescent 0.5.2+dfsg-1
python3-pynndescent : nearest neighbor descent for approximate
nearest neighbors

Moved to Debian Python Team Git but source does not build - most
possibly due problems with Python3.10 and numba. The latest upstream
version fails as well (with even more errors). I'd be happy if someone
from Debian Python Team could serve as Uploader and care for this.

python-pypubsub 4.0.3-5
python3-pubsub : Python 3 publish-subcribe library

Moved to Debian Python Team

I'll continue with the next batch soon.

Kind regards

Andreas.

python-sinfo 0.3.1-2
python3-sinfo : print different version information for loaded modules python-spectra 0.0.11-3
python3-spectra : Easy color scales and color conversion for
Python (Python 3 version)
python-stdlib-list 0.8.0-4
python3-stdlib-list : List of Python Standard Libraries (2.6-7, 3.2-9) python-streamz 0.6.3-1
python3-streamz : build pipelines to manage continuous streams of data python-stubserver 1.1-2
python3-stubserver : mock tester of external web dependencies for Python python-tinyalign 0.2-5
python3-tinyalign : numerical representation of differences between strings
python-typechecks 0.1.0+ds-2
python3-typechecks : express constraints on types
python-upsetplot 0.6.0-2
python3-upsetplot : Draw Lex et al.'s UpSet plots with Pandas and Matplotlib
python-wdlparse 0.1.0-2
python3-wdlparse : Workflow Description Language (WDL) parser for Python python-wordcloud 1.8.1+dfsg-2
python3-wordcloud : little word cloud generator in Python
python-xopen 1.2.1-3
python3-xopen : Python3 module to open compressed files transparently smart-open 5.2.1-3
python3-smart-open : utils for streaming large files
sorted-nearest 0.0.31+dfsg-1
python3-sorted-nearest : Cython helper library for pyranges sphinxcontrib-autoprogram 0.1.7-1
python3-sphinxcontrib.autoprogram : automated documentation of CLI programs for Sphinx (Python 3)

Thanks,
--
Sandro "morph" Tosi
My website: http://sandrotosi.me/
Me at Debian: http://wiki.debian.org/SandroTosi
Twitter: https://twitter.com/sandrotosi

--
http://fam-tille.de

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Am Sun, Jan 02, 2022 at 09:00:27PM +0100 schrieb Andreas Tille:
...
Continuing with moving packages from Debian Med to Debian Python Team

python-sinfo 0.3.1-2
python3-sinfo : print different version information for loaded modules

Moved to Debian Python Team.

python-spectra 0.0.11-3
python3-spectra : Easy color scales and color conversion for
Python (Python 3 version)

Moved to Debian Python Team.

python-stdlib-list 0.8.0-4
python3-stdlib-list : List of Python Standard Libraries (2.6-7, 3.2-9)

Moved to Debian Python Team.

python-streamz 0.6.3-1
python3-streamz : build pipelines to manage continuous streams of data

Moved to Debian Python Team.
Unfortunately there is a build time test issue in my local pbuilder environment:
_______________________ test_from_iterable_backpressure ________________________

def test_from_iterable_backpressure():
it = iter(range(5))
source = Source.from_iterable(it)


wait_for(lambda: L == [0], 1, period=0.01)

assert next(it) == 2 # 1 is in blocked _emit

E assert 1 == 2
E + where 1 = next(<range_iterator object at 0x7f93d11e14b0>)

streamz/tests/test_sources.py:151: AssertionError

However, salsa-ci is fine:
https://salsa.debian.org/python-team/packages/python-streamz/-/pipelines/333644
(besides i386 build which also failed before)

Could somebody please check and upload?

python-stubserver 1.1-2
python3-stubserver : mock tester of external web dependencies for Python

Moved to Debian Python Team.

python-tinyalign 0.2-5
python3-tinyalign : numerical representation of differences between strings

This is mentioned in med-* tasks and directly used by Biologists. I think
we should keep it inside Debian Med team.

python-typechecks 0.1.0+ds-2
python3-typechecks : express constraints on types

Moved to Debian Python Team.

python-upsetplot 0.6.0-2
python3-upsetplot : Draw Lex et al.'s UpSet plots with Pandas and Matplotlib

Moved to Debian Python Team.

python-wdlparse 0.1.0-2
python3-wdlparse : Workflow Description Language (WDL) parser for Python

This is mentioned in med-* tasks and directly used by Biologists. I think
we should keep it inside Debian Med team.

python-wordcloud 1.8.1+dfsg-2
python3-wordcloud : little word cloud generator in Python

Moved to Debian Python Team.

python-xopen 1.2.1-3
python3-xopen : Python3 module to open compressed files transparently

Moved to Debian Python Team.

smart-open 5.2.1-3
python3-smart-open : utils for streaming large files

Moved to Debian Python Team.

sorted-nearest 0.0.31+dfsg-1
python3-sorted-nearest : Cython helper library for pyranges

This is just a helper for pyranges which is clearly a Debian Med package.
I see no real value in moving this to Debian Python Team.

sphinxcontrib-autoprogram 0.1.7-1
python3-sphinxcontrib.autoprogram : automated documentation of CLI programs for Sphinx (Python 3)

Moved to Debian Python Team.

Thanks,

You are welcome. I'd love to see an additional Uploader for all these
moved packages. Please let me know if you see some additional room for enhancement of the cooperation between Debian Python Team and Debian Med
Team.

Kind regards

Andreas.

--
http://fam-tille.de

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